AMBER: Namelist problem

From: Vlad Cojocaru <>
Date: Mon, 05 Jul 2004 11:25:07 +0200

Dear Amber users,
   Could somebody give me a hint what's wrong with the input below.
AMBER 8 on AIX exits with the error:
1525-049 The list-directed or NAMELIST READ statement cannot be
completed because the input data did not specify a valid delimited
character string. The program will recover by ignoring the item in the
READ statement.
ERROR: 0031-250 task 6: Terminated
ERROR: 0031-250 task 2: Terminated
ERROR: 0031-250 task 3: Terminated
ERROR: 0031-250 task 7: Terminated
ERROR: 0031-250 task 4: Terminated
ERROR: 0031-250 task 0: Terminated
ERROR: 0031-250 task 1: Terminated
ERROR: 0031-250 task 5: Terminated
  I remember thatt for running Amber7 on AIX I had to add (export
XLFRTEOPTS="namelist=old"). Is this change in Amber8???
Thank you very much in advance

cat << EOF > equil0${jequil1}.in
 ${fname}, equilibration GB run no. ${jequil1}, `date`
  imin=0, nmropt=1, ntx=1, irest=0, ntxo=1, ntpr=50, ntwr=100,
  ntwx=100, ntwv=0, ntwe=0, ntf=1, ntb=0, cut=25.0,
  scnb=2.0, scee=1.2, igb=1, intdiel=1, extdiel=78.5, saltcon=0.0,
  rgbmax=25, rbornstat=0, offset=0.009, gbsa=0, surften=0.005,
  ntr=1, restraint_wt=500, restraintmask=:${RES1}-${RES2},
  nstlim=400000, t=0.0, dt=0.001,
  temp0=300.0, tempi=10.0, ntt=3, gamma_ln=5, vlimit=20.0, ntc=1,
 &wt type='TEMP0', istep1=0, istep2=20000, value1=10.0, value2=300.0, &end
 &wt type='TEMP0', istep1=20001, istep2=40000, value1=300.0,
value2=300.0, &end
 &wt type='END', &end
 &rst iat=0, &end

Vlad Cojocaru 
Max Planck Institute for Biophysical Chemistry 
Department: 060 
Am Fassberg 11, 37077 Goettingen, Germany 
tel: ++49-551-201.1327 
home tel: ++49-551-9963204  
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Received on Mon Jul 05 2004 - 10:53:00 PDT
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