Hi!
I'm trying to compile amber 8 on fedora 2 using the intel 8.0 fortran
compiler. I've run into a weird installation problem that prevents me from
installing an important part of the amber 8 package.
The bottom part of the error message goes something like this when I do
make serial (I'm not running a parallel system yet).:
+++++++++++++++++++++++++++++++++++++++
cd mm_pbsa; make install
make[1]: Entering directory `/Downloads/Amber8/amber8/src/mm_pbsa'
ifort -o make_crd_hg make_crd_hg.o ../lib/amopen.o ../lib/mexit.o
gcc -O2 -o molsurf molsurf.o -lm
mv make_crd_hg molsurf ../../exe
cp mm_pbsa.pl mm_pbsa_statistics.pl ../../exe
make[1]: Leaving directory `/Downloads/Amber8/amber8/src/mm_pbsa'
cd pbsa; make install
make[1]: Entering directory `/Downloads/Amber8/amber8/src/pbsa'
cpp -traditional -P -I/Downloads/Amber8/amber8/src/include pb_fdfrc.f >
_pb_fdfrc.f
ifort -c -w95 -mp1 -ip -O3 -FR -o pb_fdfrc.o _pb_fdfrc.f
fortcom: Error: _pb_fdfrc.f, line 435: This name does not have a type, and
must have an explicit type. [SRFARC]
iarc = srfarc(iatm)
.................^
fortcom: Error: _pb_fdfrc.f, line 443: The shapes of the array expressions
do not conform. [DFM]
dfm = dum*mvec; dfn = dum*nvec
..........^
fortcom: Error: _pb_fdfrc.f, line 443: The shapes of the array expressions
do not conform. [DFN]
dfm = dum*mvec; dfn = dum*nvec
..........................^
compilation aborted for _pb_fdfrc.f (code 1)
make[1]: *** [pb_fdfrc.o] Error 1
make[1]: Leaving directory `/Downloads/Amber8/amber8/src/pbsa'
make: *** [serial] Error 2
++++++++++++++++++++++++++++++++++++++++++++
When I ignore the error messages and continue compiling, I get this
message when testing the compilation and the test ends. Everything else up
to this point is a PASS.
cd cnstph; ./Run.cnstph
./Run.cnstph: Program error
make: *** [test.sander.no_lmod] Error 1
Any suggestions or comments? I'm pretty new with linux and amber in
general, so if I missed something pretty obvious, don't hesitate to tell
me.
Thanks
Luigi
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Received on Mon Jul 19 2004 - 06:53:01 PDT
