Re: AMBER: Is it a bug?(in prep file opls_unict.in)

From: David A. Case <case.scripps.edu>
Date: Wed, 21 Jul 2004 01:52:22 -0700

On Sat, Jul 17, 2004, Wu Lei wrote:
>
> look at the last three atoms
>
> PHENYLALANINE, ALL ATOM AROMATIC PARAMETERS, COO- ANION
> PHE
> PHE INT 1
> CORR OMIT DU BEG
> 0.00
> 1 DUMM DU M 0 -1 -2 0.000 0.000 0.000 0.00000
> 2 DUMM DU M 1 0 -1 1.449 0.000 0.000 0.00000
> 3 DUMM DU M 2 1 0 1.522 111.100 0.000 0.00000
> 4 N N M 3 2 1 1.335 116.600 180.000 -0.57000
> 5 HN H E 4 3 2 1.010 119.800 0.000 0.37000
> 6 CA CH M 4 3 2 1.449 121.900 180.000 0.10000
> 7 CB C2 S 6 4 3 1.525 111.100 60.000 0.11500
> 8 CG CK S 7 6 4 1.510 115.000 180.000 -0.11500
> 9 CD1 CK B 8 7 6 1.400 120.000 180.000 -0.11500
> 10 HD1 HK E 9 8 7 1.090 120.000 0.000 0.11500
> 11 CE1 CK B 9 8 7 1.400 120.000 180.000 -0.11500
> 12 HE1 HK E 11 9 8 1.090 120.000 180.000 0.11500
> 13 CZ CK B 11 9 8 1.400 120.000 0.000 -0.11500
> 14 HZ HK E 13 11 9 1.090 120.000 180.000 0.11500
> 15 CE2 CK B 13 11 9 1.400 120.000 0.000 -0.11500
> 16 HE2 HK E 15 13 11 1.090 120.000 180.000 0.11500
> 17 CD2 CK S 15 13 11 1.400 120.000 0.000 -0.11500
> 18 HD2 HK E 17 15 13 1.090 120.000 180.000 0.11500
> 14 (19?) C C M 6 4 3 1.522 111.100 180.000 0.70000
> 15 (20?) O O2 E 14 6 4 1.229 120.500 0.000 -0.80000
> 16 (21?) OXT O2 E 14 6 4 1.229 120.500 180.000 -0.80000

The numbers in the first column are not used for anything, as far as I know.

....dac

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Received on Wed Jul 21 2004 - 10:53:00 PDT
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