Scott,
This is correct. Emmanuel was trying to compile a future version of pbsa
for amber9. He should just bug me instead.
Best,
Ray
Scott Brozell wrote:
>On Sun, 18 Jul 2004 echanco.uci.edu wrote:
>
>
>
>>I'm trying to compile amber 8 on fedora 2 using the intel 8.0 fortran
>>compiler. I've run into a weird installation problem that prevents me from
>>installing an important part of the amber 8 package.
>>The bottom part of the error message goes something like this when I do
>>make serial (I'm not running a parallel system yet).:
>>
>>cd pbsa; make install
>>make[1]: Entering directory `/Downloads/Amber8/amber8/src/pbsa'
>>cpp -traditional -P -I/Downloads/Amber8/amber8/src/include pb_fdfrc.f >
>>_pb_fdfrc.f
>>ifort -c -w95 -mp1 -ip -O3 -FR -o pb_fdfrc.o _pb_fdfrc.f
>>fortcom: Error: _pb_fdfrc.f, line 435: This name does not have a type, and
>>must have an explicit type. [SRFARC]
>> iarc = srfarc(iatm)
>>................^
>>fortcom: Error: _pb_fdfrc.f, line 443: The shapes of the array expressions
>>do not conform. [DFM]
>> dfm = dum*mvec; dfn = dum*nvec
>>.........^
>>fortcom: Error: _pb_fdfrc.f, line 443: The shapes of the array expressions
>>do not conform. [DFN]
>> dfm = dum*mvec; dfn = dum*nvec
>>.........................^
>>compilation aborted for _pb_fdfrc.f (code 1)
>>make[1]: *** [pb_fdfrc.o] Error 1
>>make[1]: Leaving directory `/Downloads/Amber8/amber8/src/pbsa'
>>make: *** [serial] Error 2
>>++++++++++++++++++++++++++++++++++++++++++++
>>
>>
>
>Weird is apt.
>There has never been a source file pb_fdfrc.f.
>Variables srfarc and dfm do not exist in any pbsa source file.
>My guess is that pb_fdfrc.f should be pb_force.f.
>It appears that your files have been mangled.
>Since src/pbsa/Makefile has been mangled, it may not be the preprocessor
>that has run amok. Reinstall all the files in src/pbsa and if the problem
>persists then send verbose details on the origin of and your installation
>of Amber8.
>
>Scott Brozell
>
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>.
>
>
>
--
====================================================
Ray Luo, Ph.D.
Department of Molecular Biology and Biochemistry
University of California, Irvine, CA 92697-3900
Office: (949)824-9528 Lab: (949)824-9562
Fax: (949)824-8551 e-mail: rluo.uci.edu
Home page: http://rayl0.bio.uci.edu/rayl/
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Received on Mon Jul 19 2004 - 20:53:02 PDT
