AMBER: what is averaged RMS fluctuation?

From: <jz7.duke.edu>
Date: Mon, 12 Jul 2004 12:17:30 -0400 (EDT)

Dear all,

Sorry to ask about such a trival question. What is the definition of the
RMS fluctuation averaged over a period of time? For example, I have a
trajectory of the MD simulation. I want to know the fluctuation of each
residue during the MD simulation. What is the best way to describe it
(something like a RMSD plot?)?

Thanks a lot!
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Received on Mon Jul 12 2004 - 17:53:01 PDT
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