Amber Archive Apr 2005 By Thread
- AMBER: GB dynamics mathew k varghese (Thu Mar 31 2005 - 20:01:30 PST)
- Re: AMBER: GB dynamics David A. Case (Fri Apr 01 2005 - 08:16:46 PST)
- AMBER: trajectory alignment using ptraj Wen Li (Fri Apr 01 2005 - 09:38:02 PST)
- Re: AMBER: trajectory alignment using ptraj Thomas E. Cheatham, III (Fri Apr 01 2005 - 09:47:30 PST)
- Re: AMBER: trajectory alignment using ptraj Wen Li (Fri Apr 01 2005 - 10:42:36 PST)
- Re: AMBER: trajectory alignment using ptraj Wen Li (Fri Apr 01 2005 - 12:12:34 PST)
- Re: AMBER: trajectory alignment using ptraj Thomas E. Cheatham, III (Fri Apr 01 2005 - 12:39:07 PST)
- Re: AMBER: trajectory alignment using ptraj Wen Li (Fri Apr 01 2005 - 13:23:14 PST)
- Re: AMBER: trajectory alignment using ptraj Thomas E. Cheatham, III (Fri Apr 01 2005 - 13:38:50 PST)
- Re: AMBER: trajectory alignment using ptraj Wen Li (Fri Apr 01 2005 - 18:42:43 PST)
- Re: AMBER: trajectory alignment using ptraj Wen Li (Fri Apr 01 2005 - 13:37:57 PST)
- AMBER: trajectory alignment using ptraj Wen Li (Fri Apr 01 2005 - 09:38:02 PST)
- Re: AMBER: GB dynamics David A. Case (Fri Apr 01 2005 - 08:16:46 PST)
- AMBER: solvateoct mymolecule CHCL3BOX 10 PROBLEM!!! chaiann ng (Thu Mar 31 2005 - 20:30:40 PST)
- Re: AMBER: solvateoct mymolecule CHCL3BOX 10 PROBLEM!!! Jiri Matousek (Thu Mar 31 2005 - 23:37:39 PST)
- AMBER: How to fix the torsion angles during energy minimization Ananda Rama Krishnan Selvaraj (Thu Mar 31 2005 - 22:42:27 PST)
- Re: AMBER: How to fix the torsion angles during energy minimization Ananda Rama Krishnan Selvaraj (Fri Apr 01 2005 - 04:54:18 PST)
- Re: AMBER: How to fix the torsion angles during energy minimization David A. Case (Fri Apr 01 2005 - 09:24:37 PST)
- AMBER: scaleCharges with polarisable force fields Phineus Markwick (Fri Apr 01 2005 - 04:57:43 PST)
- Re: AMBER: scaleCharges with polarisable force fields David A. Case (Fri Apr 01 2005 - 08:31:22 PST)
- AMBER: Problems with protonate on Linux Atro Tossavainen (Fri Apr 01 2005 - 05:09:32 PST)
- Re: AMBER: Problems with protonate on Linux David A. Case (Fri Apr 01 2005 - 09:34:17 PST)
- Re: AMBER: Problems with protonate on Linux Atro Tossavainen (Tue Apr 05 2005 - 23:46:34 PDT)
- Re: AMBER: Problems with protonate on Linux David A. Case (Wed Apr 06 2005 - 09:19:11 PDT)
- Re: AMBER: Problems with protonate on Linux Atro Tossavainen (Tue Apr 05 2005 - 23:46:34 PDT)
- Re: AMBER: Problems with protonate on Linux David A. Case (Fri Apr 01 2005 - 09:34:17 PST)
- AMBER: reference of Targeted MD xhu1.memphis.edu (Fri Apr 01 2005 - 13:52:59 PST)
- Re: AMBER: GB dynamics Bill Ross (Fri Apr 01 2005 - 13:55:07 PST)
- AMBER: oxo-heme Peter Gannett (Fri Apr 01 2005 - 14:32:47 PST)
- Re: AMBER: Compiling on dual-opteron with pathscale 2.1 on RHEL 4 AS Robert Duke (Sat Apr 02 2005 - 16:42:47 PST)
- AMBER: problem with input files when using ff02EP + pol3 Phineus Markwick (Sun Apr 03 2005 - 05:35:28 PDT)
- Re: AMBER: problem with input files when using ff02EP + pol3 David A. Case (Sun Apr 03 2005 - 22:18:29 PDT)
- Re: AMBER: All the tests passed except prmtop and prepin... shuli (Sun Apr 03 2005 - 08:24:47 PDT)
- Re: AMBER: All the tests passed except prmtop and prepin... shuli (Mon Apr 04 2005 - 07:56:23 PDT)
- AMBER: helical parameters obtaining Kateryna Miroshnychenko (Sat Apr 02 2005 - 03:08:17 PST)
- AMBER: surface area John (Mon Apr 04 2005 - 03:35:58 PDT)
- Re: AMBER: surface area Tim Meyer (Mon Apr 04 2005 - 08:38:12 PDT)
- AMBER: Sander minimization & dynamic question chaiann ng (Mon Apr 04 2005 - 03:45:48 PDT)
- Re: AMBER: Sander minimization & dynamic question Carlos Simmerling (Mon Apr 04 2005 - 04:48:26 PDT)
- Re: AMBER: Sander minimization & dynamic question Andreas Svrcek-Seiler (Mon Apr 04 2005 - 05:01:32 PDT)
- AMBER: ff02EP + pol3 (2) Phineus Markwick (Mon Apr 04 2005 - 05:06:36 PDT)
- Re: AMBER: ff02EP + pol3 (2) David A. Case (Mon Apr 04 2005 - 23:28:22 PDT)
- AMBER: emilia wu (Mon Apr 04 2005 - 07:11:48 PDT)
- Re: AMBER: David A. Case (Mon Apr 04 2005 - 23:06:34 PDT)
- Re: Re: AMBER: emilia wu (Mon Apr 04 2005 - 23:43:49 PDT)
- RE: Re: AMBER: Wells, David H (Tue Apr 05 2005 - 00:13:56 PDT)
- Re: RE: Re: AMBER: emilia wu (Tue Apr 05 2005 - 05:25:42 PDT)
- Re: AMBER: David A. Case (Mon Apr 04 2005 - 23:06:34 PDT)
- AMBER: single-stranded poly(rC) simulation Kateryna Miroshnychenko (Mon Apr 04 2005 - 06:49:39 PDT)
- Re: AMBER: single-stranded poly(rC) simulation David A. Case (Mon Apr 04 2005 - 23:31:35 PDT)
- AMBER: force constant Unit used in TMD xhu1.memphis.edu (Mon Apr 04 2005 - 08:05:30 PDT)
- Re: AMBER: force constant Unit used in TMD Carlos Simmerling (Mon Apr 04 2005 - 09:06:45 PDT)
- Re: AMBER: force constant Unit used in TMD xhu1.memphis.edu (Mon Apr 04 2005 - 09:33:01 PDT)
- Re: AMBER: force constant Unit used in TMD Viktor Hornak (Mon Apr 04 2005 - 09:53:23 PDT)
- Re: AMBER: force constant Unit used in TMD Asim Okur (Mon Apr 04 2005 - 10:36:08 PDT)
- Re: AMBER: force constant Unit used in TMD Viktor Hornak (Mon Apr 04 2005 - 09:53:23 PDT)
- Re: AMBER: force constant Unit used in TMD xhu1.memphis.edu (Mon Apr 04 2005 - 10:28:36 PDT)
- Re: AMBER: force constant Unit used in TMD xhu1.memphis.edu (Mon Apr 04 2005 - 10:59:02 PDT)
- AMBER: Compile Error on Running Amber on AMD opterons in the Linux-based clusters Wu Yingliang (Mon Apr 04 2005 - 23:18:11 PDT)
- Re: AMBER: Compile Error on Running Amber on AMD opterons in the Linux-based clusters Wei Zhang (Tue Apr 05 2005 - 00:49:38 PDT)
- Re: AMBER: Compile Error on Running Amber on AMD opterons in the Linux-based clusters David A. Case (Tue Apr 05 2005 - 08:31:15 PDT)
- Re: AMBER: Compile Error on Running Amber on AMD opterons in the Linux-based clusters Bill Ross (Tue Apr 05 2005 - 09:26:34 PDT)
- AMBER: AMBER 8.0 problems with impose (tleap) on linux Guillermo Mulliert Carlín (Mon Apr 04 2005 - 23:35:17 PDT)
- Re: AMBER: AMBER 8.0 problems with impose (tleap) on linux David A. Case (Tue Apr 05 2005 - 21:48:14 PDT)
- AMBER: how to make a nonsymmetric box around the solute Lina Nilsson (Tue Apr 05 2005 - 00:56:44 PDT)
- AMBER: doble C and N terminal Stefano Federico Massimiliano Pieraccini (Stefano.Pieraccini) (Tue Apr 05 2005 - 02:45:58 PDT)
- Re: AMBER: doble C and N terminal David A. Case (Tue Apr 05 2005 - 14:25:10 PDT)
- AMBER: GB with Langevin dynamics problem Peter Varnai (Tue Apr 05 2005 - 09:04:15 PDT)
- Re: AMBER: GB with Langevin dynamics problem Carlos Simmerling (Tue Apr 05 2005 - 09:17:24 PDT)
- Re: AMBER: GB with Langevin dynamics problem Andreas Svrcek-Seiler (Tue Apr 05 2005 - 10:04:08 PDT)
- AMBER: Re:Re:single-stranded poly(rC) simulation Kateryna Miroshnychenko (Tue Apr 05 2005 - 10:37:54 PDT)
- Re: AMBER: Re:Re:single-stranded poly(rC) simulation Thomas E. Cheatham, III (Tue Apr 05 2005 - 11:32:15 PDT)
- AMBER: Protein with structural ions Kara Wald (Tue Apr 05 2005 - 14:29:46 PDT)
- Re: AMBER: Protein with structural ions Oliver Hucke (Tue Apr 05 2005 - 14:42:29 PDT)
- RE: AMBER: Protein with structural ions Kara Di Giorgio (Tue Apr 12 2005 - 08:51:32 PDT)
- Re: AMBER: Protein with structural ions Carlos Simmerling (Tue Apr 12 2005 - 09:09:48 PDT)
- Re: AMBER: Protein with structural ions Kara Di Giorgio (Tue Apr 12 2005 - 09:59:40 PDT)
- Re: Re: AMBER: Protein with structural ions Yong Xu (Tue Apr 05 2005 - 21:34:55 PDT)
- Re: AMBER: Protein with structural ions Tim Meyer (Thu Apr 07 2005 - 07:05:15 PDT)
- Re: AMBER: Protein with structural ions Kara Di Giorgio (Thu Apr 07 2005 - 22:29:26 PDT)
- Re: AMBER: Protein with structural ions David A. Case (Fri Apr 08 2005 - 08:41:22 PDT)
- Re: AMBER: Protein with structural ions Kara Di Giorgio (Fri Apr 08 2005 - 09:30:26 PDT)
- Re: AMBER: Protein with structural ions David A. Case (Fri Apr 08 2005 - 10:29:44 PDT)
- Re: AMBER: Protein with structural ions Kara Di Giorgio (Fri Apr 08 2005 - 11:55:41 PDT)
- Re: AMBER: Protein with structural ions Kara Di Giorgio (Sun Apr 10 2005 - 20:05:08 PDT)
- Re: AMBER: Protein with structural ions David A. Case (Sun Apr 10 2005 - 21:04:52 PDT)
- Re: AMBER: Protein with structural ions Kara Di Giorgio (Sun Apr 10 2005 - 21:47:29 PDT)
- Re: AMBER: Protein with structural ions David A. Case (Mon Apr 11 2005 - 07:50:28 PDT)
- Re: AMBER: Protein with structural ions Kara Di Giorgio (Mon Apr 11 2005 - 08:40:45 PDT)
- Re: Re: AMBER: Protein with structural ions Y. Xu (Thu Apr 07 2005 - 23:39:45 PDT)
- Re: AMBER: Protein with structural ions Carlos Simmerling (Tue Apr 12 2005 - 09:09:48 PDT)
- AMBER: FW: Amber installation Eric Mullins (Wed Apr 06 2005 - 08:36:20 PDT)
- Re: AMBER: FW: Amber installation David A. Case (Wed Apr 06 2005 - 14:39:42 PDT)
- AMBER: a bimolecular reaction Eric Hu (Wed Apr 06 2005 - 10:14:23 PDT)
- Re: AMBER: a bimolecular reaction David A. Case (Tue Apr 12 2005 - 09:59:07 PDT)
- Re: AMBER: a bimolecular reaction duan_list.albert.genomecenter.ucdavis.edu (Tue Apr 12 2005 - 11:00:14 PDT)
- Re: AMBER: a bimolecular reaction Eric Hu (Tue Apr 12 2005 - 16:50:58 PDT)
- Re: AMBER: a bimolecular reaction Yong Duan (Tue Apr 12 2005 - 17:22:51 PDT)
- Re: AMBER: a bimolecular reaction Eric Hu (Wed Apr 13 2005 - 11:08:03 PDT)
- RE: AMBER: a bimolecular reaction Yong Duan (Wed Apr 13 2005 - 12:51:08 PDT)
- Re: AMBER: a bimolecular reaction duan_list.albert.genomecenter.ucdavis.edu (Tue Apr 12 2005 - 11:00:14 PDT)
- Re: AMBER: a bimolecular reaction David A. Case (Tue Apr 12 2005 - 09:59:07 PDT)
- AMBER: About Gaussian Key Words Katagiri Daisuke (Wed Apr 06 2005 - 20:10:12 PDT)
- RE: AMBER: About Gaussian Key Words Vineet Pande (Thu Apr 07 2005 - 01:36:04 PDT)
- AMBER: value of SALTCON mathew k varghese (Wed Apr 06 2005 - 21:29:01 PDT)
- Re: AMBER: value of SALTCON David A. Case (Thu Apr 07 2005 - 11:25:50 PDT)
- AMBER: combine mdcrd using ptraj xueping (Wed Apr 06 2005 - 21:41:48 PDT)
- Re: AMBER: combine mdcrd using ptraj Asim Okur (Wed Apr 06 2005 - 22:17:57 PDT)
- Re: AMBER: combine mdcrd using ptraj xueping (Wed Apr 06 2005 - 23:59:54 PDT)
- Re: AMBER: combine mdcrd using ptraj Lihua Wang (Thu Apr 07 2005 - 00:45:18 PDT)
- Re: AMBER: combine mdcrd using ptraj xueping (Thu Apr 07 2005 - 02:13:59 PDT)
- AMBER: RADIOPT=1 Fabien Cailliez (Thu Apr 07 2005 - 06:19:09 PDT)
- AMBER: RE: system comparison for amber Ross Walker (Thu Apr 07 2005 - 09:41:06 PDT)
- Re: AMBER: RE: system comparison for amber Carlos Simmerling (Thu Apr 07 2005 - 10:00:18 PDT)
- AMBER: leap single precision Guanglei Cui (Thu Apr 07 2005 - 11:04:20 PDT)
- Re: AMBER: leap single precision Scott Brozell (Fri Apr 08 2005 - 00:07:31 PDT)
- Re: AMBER: leap single precision Guanglei Cui (Fri Apr 08 2005 - 09:19:38 PDT)
- Re: AMBER: leap single precision David A. Case (Sat Apr 09 2005 - 22:27:52 PDT)
- Re: AMBER: leap single precision Guanglei Cui (Fri Apr 08 2005 - 09:19:38 PDT)
- Re: AMBER: leap single precision Scott Brozell (Fri Apr 08 2005 - 00:07:31 PDT)
- Re: AMBER: About Gaussian Key Words (fwd) duan_list.albert.genomecenter.ucdavis.edu (Thu Apr 07 2005 - 16:09:25 PDT)
- Re: AMBER: About Gaussian Key Words (fwd) Daisuke Katagiri (Mon Apr 11 2005 - 17:03:36 PDT)
- AMBER: makeDIST_RST ERROR Y. Xu (Thu Apr 07 2005 - 19:14:19 PDT)
- Re: AMBER: makeDIST_RST ERROR David A. Case (Fri Apr 08 2005 - 08:36:30 PDT)
- AMBER: problems with "protonate" Kenley Barrett (Thu Apr 07 2005 - 19:27:07 PDT)
- Re: AMBER: problems with "protonate" David A. Case (Fri Apr 08 2005 - 08:49:29 PDT)
- Re: AMBER: problems with "protonate" Kenley Barrett (Mon Apr 11 2005 - 14:20:47 PDT)
- Re: AMBER: problems with "protonate" David A. Case (Mon Apr 11 2005 - 18:45:47 PDT)
- Re: AMBER: problems with "protonate" Kenley Barrett (Mon Apr 11 2005 - 14:20:47 PDT)
- Re: AMBER: problems with "protonate" Bill Ross (Mon Apr 11 2005 - 15:33:17 PDT)
- Re: AMBER: problems with "protonate" Bill Ross (Tue Apr 12 2005 - 09:14:27 PDT)
- Re: AMBER: problems with "protonate" David A. Case (Fri Apr 08 2005 - 08:49:29 PDT)
- AMBER: how to get the parameters for modified amino acid residue? ying xiong (Thu Apr 07 2005 - 20:31:14 PDT)
- Re: AMBER: how to get the parameters for modified amino acid residue? FyD (Fri Apr 08 2005 - 09:03:34 PDT)
- Re: AMBER: how to get the parameters for modified amino acid residue? David A. Case (Sat Apr 09 2005 - 22:29:09 PDT)
- AMBER: linit in mm-pbsa Fabien Cailliez (Fri Apr 08 2005 - 02:08:52 PDT)
- Re: AMBER: linit in mm-pbsa Arantxa Sanz (Fri Apr 08 2005 - 02:43:22 PDT)
- Re: AMBER: linit in mm-pbsa Ray Luo (Thu Apr 07 2005 - 21:30:06 PDT)
- Re: AMBER: linit in mm-pbsa Arantxa Sanz (Fri Apr 08 2005 - 02:43:22 PDT)
- AMBER: Disulfide bond michael chen (Fri Apr 08 2005 - 07:36:41 PDT)
- Re: AMBER: Disulfide bond Carlos Simmerling (Fri Apr 08 2005 - 07:54:46 PDT)
- Re: AMBER: Disulfide bond FyD (Fri Apr 08 2005 - 09:09:03 PDT)
- AMBER: GB with Langevin dynamics problem 2 Peter Varnai (Fri Apr 08 2005 - 09:29:08 PDT)
- Re: AMBER: GB with Langevin dynamics problem 2 David A. Case (Fri Apr 08 2005 - 10:48:27 PDT)
- AMBER: GB with Langevin dynamics - solution Peter Varnai (Mon Apr 11 2005 - 10:18:13 PDT)
- Re: AMBER: GB with Langevin dynamics - solution David A. Case (Tue Apr 12 2005 - 09:56:34 PDT)
- Re: AMBER: GB with Langevin dynamics - solution Peter Varnai (Tue Apr 12 2005 - 10:39:54 PDT)
- AMBER: GB with Langevin dynamics - solution Peter Varnai (Mon Apr 11 2005 - 10:18:13 PDT)
- Re: AMBER: GB with Langevin dynamics problem 2 Andreas Svrcek-Seiler (Fri Apr 08 2005 - 10:55:48 PDT)
- Re: AMBER: GB with Langevin dynamics problem 2 David A. Case (Sat Apr 09 2005 - 22:34:48 PDT)
- Re: AMBER: GB with Langevin dynamics problem 2 Carlos Simmerling (Fri Apr 08 2005 - 12:03:14 PDT)
- Re: AMBER: GB with Langevin dynamics problem 2 David A. Case (Fri Apr 08 2005 - 10:48:27 PDT)
- AMBER: Announcment: Nucleic Acid Builder (NAB) version 5 is released David A. Case (Fri Apr 08 2005 - 09:52:54 PDT)
- AMBER: question about TGMD: vlimit exceeded for step xhu1.memphis.edu (Fri Apr 08 2005 - 13:31:10 PDT)
- Re: AMBER: question about TGMD: vlimit exceeded for step Viktor Hornak (Fri Apr 08 2005 - 13:47:40 PDT)
- Re: AMBER: question about TGMD: vlimit exceeded for step xhu1.memphis.edu (Fri Apr 08 2005 - 14:55:05 PDT)
- Re: AMBER: question about TGMD: vlimit exceeded for step Viktor Hornak (Fri Apr 08 2005 - 15:24:13 PDT)
- Re: AMBER: question about TGMD: vlimit exceeded for step xhu1.memphis.edu (Fri Apr 08 2005 - 16:04:17 PDT)
- AMBER: average structure-ptraj xueping (Sat Apr 09 2005 - 01:23:23 PDT)
- Re: AMBER: average structure-ptraj Carlos Simmerling (Sat Apr 09 2005 - 08:02:02 PDT)
- Re: AMBER: average structure-ptraj xueping (Sun Apr 10 2005 - 01:50:19 PDT)
- Re: AMBER: average structure-ptraj xueping (Sun Apr 10 2005 - 02:10:55 PDT)
- AMBER: A question on connecting residues in xleap Hwankyu Lee (Sun Apr 10 2005 - 09:54:55 PDT)
- RE: AMBER: A question on connecting residues in xleap Ross Walker (Sun Apr 10 2005 - 11:25:16 PDT)
- Re: AMBER: A question on connecting residues in xleap Hwankyu Lee (Sun Apr 10 2005 - 14:22:16 PDT)
- RE: AMBER: A question on connecting residues in xleap Ross Walker (Sun Apr 10 2005 - 22:00:34 PDT)
- Re: AMBER: A question on connecting residues in xleap Hwankyu Lee (Mon Apr 11 2005 - 07:49:47 PDT)
- RE: AMBER: A question on connecting residues in xleap Ross Walker (Mon Apr 11 2005 - 10:13:15 PDT)
- Re: AMBER: A question on connecting residues in xleap Hwankyu Lee (Sun Apr 10 2005 - 14:22:16 PDT)
- RE: AMBER: A question on connecting residues in xleap Ross Walker (Sun Apr 10 2005 - 11:25:16 PDT)
- AMBER: Warnings as a file Pavan Ghatty (Sun Apr 10 2005 - 21:37:21 PDT)
- Re: AMBER: Warnings as a file scopio (Sun Apr 10 2005 - 22:03:39 PDT)
- AMBER: Two question about dielectric constant ìÇ Îä (Mon Apr 11 2005 - 01:02:10 PDT)
- Re: AMBER: Two question about dielectric constant Carlos Simmerling (Mon Apr 11 2005 - 06:18:07 PDT)
- Re: AMBER: Two question about dielectric constant Lihua Wang (Mon Apr 11 2005 - 10:04:24 PDT)
- Re: AMBER: Two question about dielectric constant Carlos Simmerling (Mon Apr 11 2005 - 06:18:07 PDT)
- AMBER: rst file problems mathew k varghese (Mon Apr 11 2005 - 03:03:41 PDT)
- Re: AMBER: rst file problems Carlos Simmerling (Mon Apr 11 2005 - 06:22:41 PDT)
- Re: AMBER: rst file problems mathew k varghese (Mon Apr 11 2005 - 20:13:21 PDT)
- Re: AMBER: rst file problems Carlos Simmerling (Tue Apr 12 2005 - 06:39:02 PDT)
- AMBER: rdparm Tim Meyer (Tue Apr 12 2005 - 07:23:55 PDT)
- AMBER: nscm Ilyas Yildirim (Tue Apr 12 2005 - 07:55:50 PDT)
- Re: AMBER: nscm David A. Case (Tue Apr 12 2005 - 08:55:58 PDT)
- Re: AMBER: nscm duan_list.albert.genomecenter.ucdavis.edu (Tue Apr 12 2005 - 09:45:49 PDT)
- Re: AMBER: rst file problems Carlos Simmerling (Tue Apr 12 2005 - 06:39:02 PDT)
- Re: AMBER: rst file problems Furse, Kristina Elisabet (Tue Apr 12 2005 - 13:39:35 PDT)
- AMBER:FAD can't be minimized. zhli_2000.126.com (Mon Apr 11 2005 - 05:48:15 PDT)
- Re: AMBER:FAD can't be minimized. David A. Case (Mon Apr 11 2005 - 07:58:45 PDT)
- AMBER: MM_PBSA error Xin Hu (Mon Apr 11 2005 - 11:46:30 PDT)
- Re: AMBER: MM_PBSA error Holger Gohlke (Mon Apr 11 2005 - 13:49:37 PDT)
- Re: AMBER: MM_PBSA error Xin Hu (Mon Apr 11 2005 - 15:33:51 PDT)
- Re: AMBER: MM_PBSA error Holger Gohlke (Mon Apr 11 2005 - 23:30:24 PDT)
- AMBER: MM_PBSA problem Xin Hu (Tue Apr 12 2005 - 09:09:36 PDT)
- Re: AMBER: MM_PBSA problem Nelson Fonseca (Tue Apr 12 2005 - 09:20:53 PDT)
- Re: AMBER: MM_PBSA problem Xin Hu (Tue Apr 12 2005 - 12:36:07 PDT)
- Re: AMBER: MM_PBSA problem Nelson Fonseca (Tue Apr 12 2005 - 14:15:00 PDT)
- Re: AMBER: MM_PBSA problem David A. Case (Wed Apr 13 2005 - 08:23:17 PDT)
- Re: AMBER: MM_PBSA problem Xin Hu (Wed Apr 13 2005 - 10:49:05 PDT)
- Re: AMBER: MM_PBSA problem Xin Hu (Wed Apr 13 2005 - 08:28:17 PDT)
- Re: AMBER: MM_PBSA problem Fabien Cailliez (Tue Apr 12 2005 - 09:50:14 PDT)
- Re: AMBER: MM_PBSA problem Xin Hu (Tue Apr 12 2005 - 12:31:45 PDT)
- Re: AMBER: MM_PBSA error Xin Hu (Mon Apr 11 2005 - 15:33:51 PDT)
- Re: AMBER: MM_PBSA error Holger Gohlke (Mon Apr 11 2005 - 13:49:37 PDT)
- AMBER: breaking symmetry in minimization Stern, Julie (Mon Apr 11 2005 - 13:58:53 PDT)
- Re: AMBER: breaking symmetry in minimization Bill Ross (Mon Apr 11 2005 - 15:25:25 PDT)
- AMBER: Fail to load the trajectory file. Jinzhi Lei (Mon Apr 11 2005 - 17:36:34 PDT)
- Re: AMBER: Fail to load the trajectory file. Thomas E. Cheatham, III (Mon Apr 11 2005 - 19:08:11 PDT)
- Re: Re: AMBER: Fail to load the trajectory file. Jinzhi Lei (Tue Apr 12 2005 - 13:54:52 PDT)
- Re: AMBER: Fail to load the trajectory file. Thomas E. Cheatham, III (Mon Apr 11 2005 - 19:08:11 PDT)
- Re: AMBER: Fail to load the trajectory file. Bill Ross (Mon Apr 11 2005 - 17:41:52 PDT)
- Re: Re: AMBER: Fail to load the trajectory file. Jinzhi Lei (Mon Apr 11 2005 - 18:00:14 PDT)
- Re: Re: AMBER: Fail to load the trajectory file. Bill Ross (Mon Apr 11 2005 - 18:11:19 PDT)
- Re: Re: Re: AMBER: Fail to load the trajectory file. Jinzhi Lei (Mon Apr 11 2005 - 18:53:50 PDT)
- AMBER: peptide side chain modification with LEAP Hannes Barsch (Tue Apr 12 2005 - 07:19:53 PDT)
- RE: AMBER: peptide side chain modification with LEAP Ross Walker (Tue Apr 12 2005 - 08:45:23 PDT)
- AMBER: implementing AMBER in NAMD Lina Nilsson (Thu Apr 28 2005 - 07:23:16 PDT)
- AMBER: The effect appling paches Yagi Toru (Tue Apr 19 2005 - 06:11:54 PDT)
- Re: AMBER: The effect appling paches David A. Case (Tue Apr 19 2005 - 08:01:58 PDT)
- AMBER: The effect appling paches Yagi Toru (Tue Apr 19 2005 - 06:11:54 PDT)
- AMBER: Does anybody know the experimental solvation free energies of Efavirenz and some other DPC drugs Ye MEI (Tue Apr 12 2005 - 08:19:37 PDT)
- Re: AMBER: peptide side chain modification with LEAP Bill Ross (Tue Apr 12 2005 - 09:22:40 PDT)
- AMBER: Silicon related parameters luckyang.gmail.com (Tue Apr 12 2005 - 09:38:35 PDT)
- AMBER: ibelly not working Stern, Julie (Tue Apr 12 2005 - 09:52:56 PDT)
- AMBER: vdw or center box dimensions, periodicity, and the jagged edge Stern, Julie (Tue Apr 12 2005 - 10:30:38 PDT)
- AMBER: Protein With Structural Ions Kara Di Giorgio (Tue Apr 12 2005 - 10:47:52 PDT)
- AMBER: No. of Snapshots in MM/GB/SA Sagar D Khare (Tue Apr 12 2005 - 10:48:44 PDT)
- Re: AMBER: No. of Snapshots in MM/GB/SA Guangyu Sun (Tue Apr 12 2005 - 11:17:35 PDT)
- Re: AMBER: ibelly not working Bill Ross (Tue Apr 12 2005 - 11:11:28 PDT)
- AMBER: ptraj, hbond problem Joseph W.Toporowski (Tue Apr 12 2005 - 17:07:35 PDT)
- AMBER: MM-PBSA in protein-Zn-ligand system Yong Xu (Tue Apr 12 2005 - 18:37:55 PDT)
- Re: AMBER: MM-PBSA in protein-Zn-ligand system Kara Di Giorgio (Tue Apr 12 2005 - 19:50:20 PDT)
- Re: Re: AMBER: MM-PBSA in protein-Zn-ligand system Yong Xu (Tue Apr 12 2005 - 20:17:00 PDT)
- Re: AMBER: MM-PBSA in protein-Zn-ligand system Kara Di Giorgio (Tue Apr 12 2005 - 19:50:20 PDT)
- AMBER: freee energy calculation without minimised structure S.Sundar Raman (Wed Apr 13 2005 - 00:00:08 PDT)
- RE: AMBER: freee energy calculation without minimised structure Yong Duan (Wed Apr 13 2005 - 00:40:26 PDT)
- AMBER: Watson-Crick restraints YoungJin Cho (Wed Apr 13 2005 - 07:43:22 PDT)
- Re: AMBER: Watson-Crick restraints David A. Case (Wed Apr 13 2005 - 22:37:16 PDT)
- AMBER: what is wrong with my amber job or installation? Amber (Wed Apr 13 2005 - 11:57:56 PDT)
- RE: AMBER: what is wrong with my amber job or installation? Ross Walker (Wed Apr 13 2005 - 13:46:01 PDT)
- AMBER: About NAB Ilyas Yildirim (Wed Apr 13 2005 - 17:19:32 PDT)
- Re: AMBER: About NAB David A. Case (Wed Apr 13 2005 - 22:10:51 PDT)
- Re: AMBER: About NAB Ilyas Yildirim (Thu Apr 14 2005 - 17:19:14 PDT)
- Re: AMBER: About NAB David A. Case (Thu Apr 14 2005 - 18:33:26 PDT)
- Re: AMBER: About NAB Andreas Svrcek-Seiler (Thu Apr 14 2005 - 10:03:49 PDT)
- AMBER: About NAB Ilyas Yildirim (Wed Apr 13 2005 - 17:19:32 PDT)
- RE: AMBER: what is wrong with my amber job or installation? Ross Walker (Wed Apr 13 2005 - 13:46:01 PDT)
- AMBER: Formatting a restraint file Kara Wald (Wed Apr 13 2005 - 13:57:24 PDT)
- Re: AMBER: Formatting a restraint file Carlos Simmerling (Wed Apr 13 2005 - 14:18:54 PDT)
- Re: AMBER: Formatting a restraint file Kara Di Giorgio (Wed Apr 13 2005 - 17:31:25 PDT)
- Re: AMBER: Formatting a restraint file Furse, Kristina Elisabet (Wed Apr 13 2005 - 22:06:49 PDT)
- Re: AMBER: Formatting a restraint file Kara Di Giorgio (Thu Apr 14 2005 - 08:26:17 PDT)
- Re: AMBER: Formatting a restraint file Carlos Simmerling (Thu Apr 14 2005 - 09:13:49 PDT)
- Re: AMBER: Formatting a restraint file Kara Di Giorgio (Thu Apr 14 2005 - 09:25:18 PDT)
- Re: AMBER: Formatting a restraint file David A. Case (Thu Apr 14 2005 - 09:28:23 PDT)
- Re: AMBER: Formatting a restraint file Kara Di Giorgio (Thu Apr 14 2005 - 08:26:17 PDT)
- Re: AMBER: Formatting a restraint file Furse, Kristina Elisabet (Thu Apr 14 2005 - 13:02:20 PDT)
- Re: AMBER: Formatting a restraint file Carlos Simmerling (Wed Apr 13 2005 - 14:18:54 PDT)
- AMBER: xleap, lib file question opitz.che.udel.edu (Wed Apr 13 2005 - 14:36:51 PDT)
- RE: AMBER: xleap, lib file question Ross Walker (Wed Apr 13 2005 - 15:07:04 PDT)
- AMBER: solvate water box bybaker.itsa.ucsf.edu (Wed Apr 13 2005 - 23:42:21 PDT)
- Re: AMBER: solvate water box David A. Case (Thu Apr 14 2005 - 09:30:11 PDT)
- AMBER: Antechamber -reorders atom sequence Austin B. Yongye (Thu Apr 14 2005 - 05:05:09 PDT)
- Re: AMBER: Antechamber -reorders atom sequence David A. Case (Thu Apr 14 2005 - 07:53:17 PDT)
- Re: AMBER: Antechamber -reorders atom sequence FyD (Fri Apr 15 2005 - 09:10:27 PDT)
- Re: AMBER: Antechamber -reorders atom sequence Austin B. Yongye (Fri Apr 15 2005 - 13:12:40 PDT)
- AMBER: Warning: Error opening "New" file from subroutine OPNMRG in pmemd Fabien Cailliez (Thu Apr 14 2005 - 06:05:32 PDT)
- AMBER: periodic boundaries and repeating structure Stern, Julie (Thu Apr 14 2005 - 10:55:09 PDT)
- AMBER: antechamber for cyano group nlxc (Thu Apr 14 2005 - 11:03:35 PDT)
- RE: AMBER: antechamber for cyano group Junmei Wang (Tue Apr 19 2005 - 09:28:59 PDT)
- Re: AMBER: periodic boundaries and repeating structure Bill Ross (Thu Apr 14 2005 - 11:13:48 PDT)
- AMBER: Sander/Mpich2 error with mpd_singinit Joe Nolan (Thu Apr 14 2005 - 13:00:09 PDT)
- Re: AMBER: Sander/Mpich2 error with mpd_singinit David LeBard (Thu Apr 14 2005 - 13:17:54 PDT)
- AMBER: small target pressure in constant pressure dynamics Eric Hu (Thu Apr 14 2005 - 14:37:49 PDT)
- Re: AMBER: small target pressure in constant pressure dynamics Thomas E. Cheatham, III (Thu Apr 14 2005 - 15:09:18 PDT)
- Re: AMBER: small target pressure in constant pressure dynamics Eric Hu (Thu Apr 14 2005 - 15:26:23 PDT)
- RE: AMBER: small target pressure in constant pressure dynamics Yong Duan (Thu Apr 14 2005 - 16:30:09 PDT)
- Re: AMBER: small target pressure in constant pressure dynamics Thomas E. Cheatham, III (Thu Apr 14 2005 - 15:09:18 PDT)
- AMBER: big fluctuation in MM-PBSA/GA Eric Hu (Thu Apr 14 2005 - 15:54:05 PDT)
- Re: AMBER: big fluctuation in MM-PBSA/GA David A. Case (Thu Apr 14 2005 - 16:33:00 PDT)
- Re: AMBER: big fluctuation in MM-PBSA/GA Eric Hu (Thu Apr 14 2005 - 17:21:40 PDT)
- Re: AMBER: big fluctuation in MM-PBSA/GA Thomas E. Cheatham, III (Thu Apr 14 2005 - 16:53:48 PDT)
- Re: AMBER: big fluctuation in MM-PBSA/GA Xin Hu (Fri Apr 15 2005 - 11:17:28 PDT)
- Re: AMBER: big fluctuation in MM-PBSA/GA Eric Hu (Fri Apr 15 2005 - 11:59:09 PDT)
- Re: AMBER: big fluctuation in MM-PBSA/GA Xin Hu (Fri Apr 15 2005 - 13:53:02 PDT)
- Re: AMBER: big fluctuation in MM-PBSA/GA Eric Hu (Fri Apr 15 2005 - 14:42:45 PDT)
- Re: AMBER: big fluctuation in MM-PBSA/GA Eric Hu (Fri Apr 15 2005 - 11:59:09 PDT)
- Re: AMBER: big fluctuation in MM-PBSA/GA David A. Case (Thu Apr 14 2005 - 16:33:00 PDT)
- AMBER: parameters in gaff.dat Lihua Wang (Thu Apr 14 2005 - 22:21:29 PDT)
- Re: AMBER: parameters in gaff.dat David A. Case (Thu Apr 14 2005 - 23:02:48 PDT)
- Re: AMBER: parameters in gaff.dat Lihua Wang (Fri Apr 15 2005 - 11:50:04 PDT)
- Re: AMBER: parameters in gaff.dat David A. Case (Fri Apr 15 2005 - 13:31:56 PDT)
- Re: AMBER: parameters in gaff.dat Lihua Wang (Fri Apr 15 2005 - 11:50:04 PDT)
- Re: AMBER: parameters in gaff.dat David A. Case (Thu Apr 14 2005 - 23:02:48 PDT)
- AMBER: how to make the prepin file for dimer and clusters of organic molecule in Amber7 Ananda Rama Krishnan Selvaraj (Fri Apr 15 2005 - 01:11:27 PDT)
- Re: AMBER: how to make the prepin file for dimer and clusters of organic molecule in Amber7 David A. Case (Fri Apr 15 2005 - 08:25:56 PDT)
- AMBER: carnal problem Ed Pate (Fri Apr 15 2005 - 09:15:54 PDT)
- AMBER: SollvateBox with ethanol Huaer XC (Fri Apr 15 2005 - 09:21:01 PDT)
- Re: AMBER: SollvateBox with ethanol Guanglei Cui (Fri Apr 15 2005 - 10:50:20 PDT)
- AMBER: Solvate with mixture of ethanol and water(Newbie question) Huaer XC (Tue Apr 26 2005 - 22:41:00 PDT)
- Re: AMBER: SollvateBox with ethanol Guanglei Cui (Fri Apr 15 2005 - 10:50:20 PDT)
- AMBER: gaff atom types Claudio Morgado (Fri Apr 15 2005 - 10:11:18 PDT)
- RE: AMBER: gaff atom types Junmei Wang (Tue Apr 19 2005 - 09:18:44 PDT)
- Re: AMBER: carnal problem Bill Ross (Fri Apr 15 2005 - 10:32:02 PDT)
- Re: AMBER: carnal problem Ed Pate (Fri Apr 15 2005 - 11:10:37 PDT)
- Re: AMBER: carnal problem Bill Ross (Fri Apr 15 2005 - 11:42:16 PDT)
- Re: AMBER: carnal problem Ed Pate (Fri Apr 15 2005 - 11:53:37 PDT)
- Re: AMBER: carnal problem Bill Ross (Fri Apr 15 2005 - 12:20:03 PDT)
- Re: AMBER: carnal problem Ed Pate (Fri Apr 15 2005 - 12:30:26 PDT)
- AMBER: RESP charges with Gaussian03 and Amber Delon Wilson (Fri Apr 15 2005 - 13:57:19 PDT)
- Re: AMBER: RESP charges with Gaussian03 and Amber FyD (Fri Apr 15 2005 - 15:16:05 PDT)
- AMBER: amber8/antechamber installation problem Xin Hu (Sat Apr 16 2005 - 18:39:07 PDT)
- Re: AMBER: amber8/antechamber installation problem David A. Case (Sun Apr 17 2005 - 14:38:51 PDT)
- Re: AMBER: amber8/antechamber installation problem Xin Hu (Tue Apr 19 2005 - 07:14:41 PDT)
- AMBER: How to restart MM_PBSA or doing the statistics only Xin Hu (Tue Apr 26 2005 - 09:00:05 PDT)
- AMBER: amber8/antechamber installation problem Xin Hu (Sat Apr 16 2005 - 18:39:07 PDT)
- AMBER: RESP charges with Gaussian03 and Amber Delon Wilson (Mon Apr 18 2005 - 06:19:16 PDT)
- Re: AMBER: RESP charges with Gaussian03 and Amber FyD (Fri Apr 15 2005 - 15:16:05 PDT)
- AMBER: the restart of replica exchange method (REM) simulations in AMBER8 Scott E. Boesch (Fri Apr 15 2005 - 14:24:24 PDT)
- Re: AMBER: the restart of replica exchange method (REM) simulations in AMBER8 Carlos Simmerling (Sat Apr 16 2005 - 05:42:37 PDT)
- AMBER: about equilibration dynamics S.Sundar Raman (Mon Apr 18 2005 - 00:18:10 PDT)
- AMBER: ATTN REVISION ÂÀº£æà (Mon Apr 18 2005 - 01:19:46 PDT)
- Re: AMBER: ATTN REVISION David A. Case (Mon Apr 18 2005 - 07:57:58 PDT)
- RE: AMBER: ATTN REVISION Junmei Wang (Wed Apr 20 2005 - 07:31:47 PDT)
- AMBER: dielectric constant Nina Fischer (Mon Apr 18 2005 - 01:22:34 PDT)
- Re: AMBER: dielectric constant David A. Case (Mon Apr 18 2005 - 08:00:41 PDT)
- AMBER:Bond lengths aren't reasonable after minimisation. zhli_2000.126.com (Mon Apr 18 2005 - 03:39:22 PDT)
- RE: AMBER:Bond lengths aren't reasonable after minimisation. Ross Walker (Mon Apr 18 2005 - 09:55:54 PDT)
- AMBER: Rep Exch. suggestion Brent Krueger (Mon Apr 18 2005 - 04:56:33 PDT)
- Re: AMBER: Rep Exch. suggestion Guanglei Cui (Mon Apr 18 2005 - 06:37:37 PDT)
- AMBER: langevin, GB and simulated annealing? pascal.baillod.epfl.ch (Mon Apr 18 2005 - 08:14:08 PDT)
- Re: AMBER: langevin, GB and simulated annealing? Adrian E. Roitberg (Mon Apr 18 2005 - 08:21:04 PDT)
- Re: AMBER: langevin, GB and simulated annealing? Carlos Simmerling (Mon Apr 18 2005 - 08:36:19 PDT)
- AMBER: langevin, GB and simulated annealing - 2 pascal.baillod.epfl.ch (Tue Apr 19 2005 - 14:07:23 PDT)
- Re: AMBER: langevin, GB and simulated annealing - 2 David A. Case (Tue Apr 19 2005 - 17:04:56 PDT)
- Re: AMBER: langevin, GB and simulated annealing - 2 Andreas Svrcek-Seiler (Wed Apr 20 2005 - 01:03:56 PDT)
- AMBER: langevin, GB and simulated annealing - 2 pascal.baillod.epfl.ch (Tue Apr 19 2005 - 14:07:23 PDT)
- AMBER: Dual Xeon EM64T Intel Fortran Compiler Shekter, Lee (Mon Apr 18 2005 - 11:17:58 PDT)
- AMBER: local dielectric constant Xavier Deupi (Mon Apr 18 2005 - 18:17:40 PDT)
- AMBER: Re: Re: AMBER: ATTN REVISION ÂÀº£æà (Mon Apr 18 2005 - 18:38:02 PDT)
- Re: AMBER: Re: Re: AMBER: ATTN REVISION David A. Case (Mon Apr 18 2005 - 21:37:13 PDT)
- RE: AMBER: Re: Re: AMBER: ATTN REVISION Junmei Wang (Tue Apr 19 2005 - 09:08:58 PDT)
- Re: AMBER: ATTN REVISION lv haiting (Tue Apr 19 2005 - 19:08:14 PDT)
- AMBER: RESP charges - multiple conformations Austin B. Yongye (Mon Apr 18 2005 - 19:54:20 PDT)
- Re: AMBER: RESP charges - multiple conformations FyD (Mon Apr 18 2005 - 22:44:04 PDT)
- Re: AMBER: RESP charges - multiple conformations Austin B. Yongye (Tue Apr 19 2005 - 05:43:45 PDT)
- Re: AMBER: RESP charges - multiple conformations FyD (Tue Apr 19 2005 - 07:26:48 PDT)
- Re: AMBER: RESP charges - multiple conformations Austin B. Yongye (Tue Apr 19 2005 - 05:43:45 PDT)
- Re: AMBER: RESP charges - multiple conformations FyD (Mon Apr 18 2005 - 22:44:04 PDT)
- AMBER: New parametrs Maciej (Mon Apr 18 2005 - 22:38:51 PDT)
- AMBER: GAFF: H type on carbon bearing a cyano group Claudio Morgado (Tue Apr 19 2005 - 01:34:12 PDT)
- AMBER: Gibbs compilation problem Maciej (Tue Apr 19 2005 - 04:36:52 PDT)
- Re: AMBER: Gibbs compilation problem David A. Case (Tue Apr 19 2005 - 07:50:12 PDT)
- AMBER: solvent accessible surface area John (Tue Apr 19 2005 - 03:45:40 PDT)
- RE: AMBER: solvent accessible surface area John (Tue Apr 19 2005 - 05:22:04 PDT)
- Re: AMBER: solvent accessible surface area David A. Case (Tue Apr 19 2005 - 07:43:24 PDT)
- Re: AMBER: solvent accessible surface area Ray Luo (Mon Apr 18 2005 - 19:12:54 PDT)
- RE: AMBER: solvent accessible surface area John (Tue Apr 19 2005 - 05:22:04 PDT)
- AMBER: Amber8 installation on IBM (power4) with SUSE 9.1 Linux (IBM XLF compiler) Soo Joo (Tue Apr 19 2005 - 02:36:26 PDT)
- Re: AMBER: Amber8 installation on IBM (power4) with SUSE 9.1 Linux (IBM XLF compiler) David A. Case (Tue Apr 19 2005 - 07:40:30 PDT)
- AMBER: a problem with mm_pbsa Ye MEI (Tue Apr 19 2005 - 07:23:01 PDT)
- Re: AMBER: a problem with mm_pbsa Xin Hu (Tue Apr 19 2005 - 07:44:35 PDT)
- AMBER: Amber compilation problem David A. Case (Tue Apr 19 2005 - 07:59:27 PDT)
- AMBER: Non-Bonded Cutoff vs PME Vineet Pande (Tue Apr 19 2005 - 09:13:26 PDT)
- Re: AMBER: Non-Bonded Cutoff vs PME David A. Case (Tue Apr 19 2005 - 14:35:51 PDT)
- Re: AMBER: Non-Bonded Cutoff vs PME Thomas E. Cheatham, III (Tue Apr 19 2005 - 16:47:10 PDT)
- Re: AMBER: Non-Bonded Cutoff vs PME Vineet Pande (Wed Apr 20 2005 - 02:17:20 PDT)
- Re: AMBER: Non-Bonded Cutoff vs PME Thomas E. Cheatham, III (Wed Apr 20 2005 - 07:53:38 PDT)
- Re: AMBER: Non-Bonded Cutoff vs PME Thomas E. Cheatham, III (Tue Apr 19 2005 - 16:47:10 PDT)
- Re: AMBER: Non-Bonded Cutoff vs PME David A. Case (Tue Apr 19 2005 - 14:35:51 PDT)
- AMBER: Yong Xu (Tue Apr 19 2005 - 19:57:44 PDT)
- AMBER: tleap and water thenmalar (Wed Apr 20 2005 - 01:13:58 PDT)
- Re: AMBER: tleap and water Thomas E. Cheatham, III (Wed Apr 20 2005 - 07:28:33 PDT)
- AMBER: GB and mm_pbsa.pl Nelson Fonseca (Wed Apr 20 2005 - 04:48:48 PDT)
- Re: AMBER: GB and mm_pbsa.pl David A. Case (Wed Apr 20 2005 - 08:12:56 PDT)
- Re: AMBER: GB and mm_pbsa.pl Nelson Fonseca (Wed Apr 20 2005 - 09:05:12 PDT)
- Re: AMBER: GB and mm_pbsa.pl David A. Case (Wed Apr 20 2005 - 10:18:35 PDT)
- Re: AMBER: GB and mm_pbsa.pl Nelson Fonseca (Wed Apr 20 2005 - 09:05:12 PDT)
- Re: AMBER: GB and mm_pbsa.pl David A. Case (Wed Apr 20 2005 - 08:12:56 PDT)
- AMBER: interaction between residues Stefano Federico Massimiliano Pieraccini (Stefano.Pieraccini) (Wed Apr 20 2005 - 07:27:31 PDT)
- AMBER: Re: RE: AMBER:Bond lengths aren't reasonable after minimisation. zhli_2000 (Wed Apr 20 2005 - 06:52:18 PDT)
- Large files to AMBER, RE: AMBER: Re: RE: AMBER:Bond lengths aren't reasonable after minimisation. Yong Duan (Wed Apr 20 2005 - 08:16:55 PDT)
- AMBER: Re: RE: AMBER:Bond lengths aren't reasonable after minimisation. Ross Walker (Wed Apr 20 2005 - 10:04:03 PDT)
- AMBER: ibelly not working Stern, Julie (Wed Apr 20 2005 - 12:40:28 PDT)
- Re: AMBER: ibelly not working David A. Case (Thu Apr 21 2005 - 08:36:40 PDT)
- AMBER: intramolecular nonbonded interactions in AMBER force field John Silvio Vieceli (Wed Apr 20 2005 - 15:06:48 PDT)
- Re: AMBER: intramolecular nonbonded interactions in AMBER force field Carlos Simmerling (Wed Apr 20 2005 - 15:28:08 PDT)
- Re: AMBER: intramolecular nonbonded interactions in AMBER force field Vineet Pande (Thu Apr 21 2005 - 01:33:19 PDT)
- Re: AMBER: intramolecular nonbonded interactions in AMBER force field Carlos Simmerling (Thu Apr 21 2005 - 05:50:46 PDT)
- Re: AMBER: intramolecular nonbonded interactions in AMBER force field Vineet Pande (Thu Apr 21 2005 - 06:26:30 PDT)
- Re: AMBER: intramolecular nonbonded interactions in AMBER force field Thomas E. Cheatham, III (Thu Apr 21 2005 - 07:50:24 PDT)
- Re: AMBER: intramolecular nonbonded interactions in AMBER force field David A. Case (Thu Apr 21 2005 - 08:42:10 PDT)
- Re: AMBER: intramolecular nonbonded interactions in AMBER force field Guanglei Cui (Fri Apr 22 2005 - 06:52:53 PDT)
- Re: AMBER: intramolecular nonbonded interactions in AMBER force field Vineet Pande (Thu Apr 21 2005 - 01:33:19 PDT)
- RE: AMBER: intramolecular nonbonded interactions in AMBER force field Ross Walker (Wed Apr 20 2005 - 15:33:41 PDT)
- Re: AMBER: intramolecular nonbonded interactions in AMBER force field Carlos Simmerling (Wed Apr 20 2005 - 15:28:08 PDT)
- AMBER: about run time in GB and PB Yong Xu (Thu Apr 21 2005 - 01:06:27 PDT)
- Re: AMBER: about run time in GB and PB Phineus Markwick (Thu Apr 21 2005 - 01:26:26 PDT)
- RE: AMBER: about run time in GB and PB Yong Duan (Thu Apr 21 2005 - 01:57:32 PDT)
- Re: RE: AMBER: about run time in GB and PB Yong Xu (Thu Apr 21 2005 - 06:17:19 PDT)
- Re: AMBER: about run time in GB and PB Phineus Markwick (Thu Apr 21 2005 - 07:10:20 PDT)
- Re: AMBER: about run time in GB and PB Yong Xu (Fri Apr 22 2005 - 01:19:05 PDT)
- Re: Re: AMBER: about run time in GB and PB Yong Xu (Thu Apr 21 2005 - 01:55:41 PDT)
- Re: AMBER: about run time in GB and PB Phineus Markwick (Thu Apr 21 2005 - 03:15:57 PDT)
- RE: AMBER: about run time in GB and PB Yong Duan (Thu Apr 21 2005 - 01:57:32 PDT)
- Re: AMBER: about run time in GB and PB Phineus Markwick (Thu Apr 21 2005 - 01:26:26 PDT)
- AMBER: On the role of neutralizing ions in GB-MD and GBSA Wu Yingliang (Thu Apr 21 2005 - 03:26:05 PDT)
- AMBER: On the role of neutralizing ions in GB-MD and GBSA Wu Yingliang (Thu Apr 21 2005 - 03:16:29 PDT)
- Re: AMBER: On the role of neutralizing ions in GB-MD and GBSA David A. Case (Thu Apr 21 2005 - 08:22:37 PDT)
- Re: Re: AMBER: On the role of neutralizing ions in GB-MD and GBSA Wu Yingliang (Thu Apr 21 2005 - 19:50:09 PDT)
- Re: AMBER: On the role of neutralizing ions in GB-MD and GBSA David A. Case (Thu Apr 21 2005 - 08:22:37 PDT)
- AMBER: Nose-Hoover thermostat Sam Moors (Thu Apr 21 2005 - 05:40:44 PDT)
- Re: AMBER: Nose-Hoover thermostat David A. Case (Thu Apr 21 2005 - 08:44:13 PDT)
- AMBER: re: about run time in GB and PB Phineus Markwick (Thu Apr 21 2005 - 07:29:33 PDT)
- AMBER: Moil-view and Quicktime movie Steve Seibold (Thu Apr 21 2005 - 07:55:01 PDT)
- AMBER: Sander bomb - atom out of bounds Joe Nolan (Thu Apr 21 2005 - 10:46:01 PDT)
- RE: AMBER: Sander bomb - atom out of bounds Ross Walker (Thu Apr 21 2005 - 11:02:18 PDT)
- AMBER: problem with belly calculation restart Ed Pate (Thu Apr 21 2005 - 17:28:59 PDT)
- AMBER: mean structure calculation mmv (Fri Apr 22 2005 - 02:17:20 PDT)
- AMBER: PB Bomb in circle(): Stored surface points over limit Nelson Fonseca (Fri Apr 22 2005 - 05:56:57 PDT)
- AMBER: writing MASKs Sagar D Khare (Fri Apr 22 2005 - 07:58:24 PDT)
- RE: AMBER: writing MASKs Vineet Pande (Fri Apr 22 2005 - 08:45:43 PDT)
- AMBER: strange VDWAALS and EEL energies calculated by pbsa Fabien Cailliez (Fri Apr 22 2005 - 08:56:41 PDT)
- Re: AMBER: strange VDWAALS and EEL energies calculated by pbsa Carlos Simmerling (Fri Apr 22 2005 - 09:05:42 PDT)
- Re: AMBER: strange VDWAALS and EEL energies calculated by pbsa David A. Case (Fri Apr 22 2005 - 09:12:15 PDT)
- Re: AMBER: strange VDWAALS and EEL energies calculated by pbsa Ray Luo (Thu Apr 21 2005 - 05:18:17 PDT)
- AMBER: Induced dipole in AMBER8 Cenk Andac (Fri Apr 22 2005 - 09:57:56 PDT)
- Re: AMBER: Induced dipole in AMBER8 David A. Case (Fri Apr 22 2005 - 18:23:41 PDT)
- Re: AMBER: Induced dipole in AMBER8 Cenk Andac (Mon Apr 25 2005 - 12:00:17 PDT)
- AMBER: atommask error Sergio E. Wong (Thu Apr 28 2005 - 23:02:05 PDT)
- Re: AMBER: atommask error hornak.csb.sunysb.edu (Fri Apr 29 2005 - 00:41:09 PDT)
- Re: AMBER: atommask error Sergio E. Wong (Fri Apr 29 2005 - 10:19:25 PDT)
- AMBER: atommask error Sergio E. Wong (Thu Apr 28 2005 - 23:02:05 PDT)
- AMBER: Amber Installation pmullins (Fri Apr 22 2005 - 11:28:34 PDT)
- Re: AMBER: Amber Installation David A. Case (Fri Apr 22 2005 - 12:14:01 PDT)
- AMBER: Calculate vdw parameters for alkaline earth metal ions Kenley Barrett (Fri Apr 22 2005 - 15:19:23 PDT)
- Re: AMBER: Calculate vdw parameters for alkaline earth metal ions Bill Ross (Fri Apr 22 2005 - 15:48:15 PDT)
- AMBER: Problem when converting AMBER trajectories to CHARMM format Chen Hu (Sat Apr 23 2005 - 15:20:56 PDT)
- Re: AMBER: Problem when converting AMBER trajectories to CHARMM format Thomas E. Cheatham, III (Sat Apr 23 2005 - 16:33:48 PDT)
- AMBER: serial and parallel Aknb (Sun Apr 24 2005 - 04:35:37 PDT)
- RE: AMBER: serial and parallel Ross Walker (Sun Apr 24 2005 - 11:49:38 PDT)
- AMBER: coordinates translation Ye MEI (Sun Apr 24 2005 - 09:26:39 PDT)
- Re: AMBER: coordinates translation Jack Lei (Sun Apr 24 2005 - 16:51:16 PDT)
- AMBER: AMBER Test Error tpatko (Sun Apr 24 2005 - 17:31:42 PDT)
- AMBER: Re: AMBER Test Error (Follow Up) tpatko (Sun Apr 24 2005 - 17:55:18 PDT)
- AMBER: How to deal with the Non-standard residue lv haiting (Mon Apr 25 2005 - 01:18:08 PDT)
- Re: AMBER: How to deal with the Non-standard residue FyD (Mon Apr 25 2005 - 13:07:33 PDT)
- AMBER: the restarting error zhli_2000.126.com (Mon Apr 25 2005 - 07:08:02 PDT)
- Re: AMBER: the restarting error Guanglei Cui (Mon Apr 25 2005 - 07:37:50 PDT)
- Re: AMBER: the restarting error zhli_2000.126.com (Tue Apr 26 2005 - 03:54:44 PDT)
- Re: AMBER: the restarting error Guanglei Cui (Mon Apr 25 2005 - 07:37:50 PDT)
- AMBER: Free energy pertubation (thermodynamic intergration) mrbroad.ilstu.edu (Mon Apr 25 2005 - 09:20:35 PDT)
- Re: AMBER: Free energy pertubation (thermodynamic intergration) Sichun Yang (Mon Apr 25 2005 - 09:55:16 PDT)
- Re: AMBER: Free energy pertubation (thermodynamic intergration) Ilyas Yildirim (Mon Apr 25 2005 - 13:43:36 PDT)
- AMBER: radius parameter for F atom Ye MEI (Mon Apr 25 2005 - 10:05:06 PDT)
- Re: AMBER: radius parameter for F atom scopio (Mon Apr 25 2005 - 18:36:16 PDT)
- Re: Re: AMBER: radius parameter for F atom Ye MEI (Tue Apr 26 2005 - 06:30:07 PDT)
- Re: AMBER: radius parameter for F atom scopio (Mon Apr 25 2005 - 18:36:16 PDT)
- AMBER: mm_pbsa problem Husni Fattayer (Mon Apr 25 2005 - 13:59:22 PDT)
- Re: AMBER: mm_pbsa problem Husni Fattayer (Wed Apr 27 2005 - 08:09:40 PDT)
- AMBER: A problem in TI approach - test case: meth2eth and eth2meth Ilyas Yildirim (Mon Apr 25 2005 - 18:47:19 PDT)
- Re: AMBER: A problem in TI approach - test case: meth2eth and eth2meth Thomas Steinbrecher (Tue Apr 26 2005 - 01:37:01 PDT)
- Re: AMBER: A problem in TI approach - test case: meth2eth and eth2meth Ilyas Yildirim (Wed Apr 27 2005 - 21:34:32 PDT)
- Re: AMBER: A problem in TI approach - test case: meth2eth and eth2meth Petr Kulhanek (Thu Apr 28 2005 - 00:02:47 PDT)
- Re: AMBER: A problem in TI approach - test case: meth2eth and eth2meth Ilyas Yildirim (Thu Apr 28 2005 - 16:34:48 PDT)
- Re: AMBER: A problem in TI approach - test case: meth2eth and eth2meth David Case (Thu Apr 28 2005 - 06:03:00 PDT)
- Re: AMBER: A problem in TI approach - test case: meth2eth and eth2meth Ilyas Yildirim (Thu Apr 28 2005 - 17:00:11 PDT)
- Re: AMBER: A problem in TI approach - test case: meth2eth and eth2meth Ilyas Yildirim (Wed Apr 27 2005 - 21:34:32 PDT)
- Re: AMBER: A problem in TI approach - test case: meth2eth and eth2meth Thomas Steinbrecher (Tue Apr 26 2005 - 01:37:01 PDT)
- AMBER: Free energy Maciej (Tue Apr 26 2005 - 00:01:16 PDT)
- AMBER: Re:Gibbs compilation problem Maciej (Tue Apr 26 2005 - 00:05:31 PDT)
- AMBER: langevin, GB and simulated annealing - 3 pascal.baillod.epfl.ch (Tue Apr 26 2005 - 03:37:16 PDT)
- Re: AMBER: langevin, GB and simulated annealing - 3 David Case (Tue Apr 26 2005 - 07:06:08 PDT)
- AMBER: langevin, GB and simulated annealing - 4 pascal.baillod.epfl.ch (Tue Apr 26 2005 - 08:23:20 PDT)
- Re: AMBER: langevin, GB and simulated annealing - 4 David Case (Tue Apr 26 2005 - 08:44:32 PDT)
- AMBER: langevin, GB and simulated annealing - 4 pascal.baillod.epfl.ch (Tue Apr 26 2005 - 08:23:20 PDT)
- Re: AMBER: langevin, GB and simulated annealing - 3 David Case (Tue Apr 26 2005 - 07:06:08 PDT)
- AMBER: AMBER Test Anthony Cruz (Tue Apr 26 2005 - 03:36:27 PDT)
- Re: AMBER: AMBER Test David Case (Tue Apr 26 2005 - 07:12:05 PDT)
- AMBER: doesn't work in pmemd, and no output in parallel simulations Hwankyu Lee (Tue Apr 26 2005 - 13:35:26 PDT)
- Re: AMBER: doesn't work in pmemd, and no output in parallel simulations Robert Duke (Tue Apr 26 2005 - 14:24:04 PDT)
- Re: AMBER: doesn't work in pmemd, and no output in parallel simulations Hwankyu Lee (Tue Apr 26 2005 - 19:46:09 PDT)
- Re: AMBER: doesn't work in pmemd, and no output in parallel simulations Robert Duke (Wed Apr 27 2005 - 05:06:46 PDT)
- Re: AMBER: doesn't work in pmemd, and no output in parallel simulations Hwankyu Lee (Tue Apr 26 2005 - 19:46:09 PDT)
- Re: AMBER: doesn't work in pmemd, and no output in parallel simulations Robert Duke (Tue Apr 26 2005 - 14:24:04 PDT)
- AMBER: error in pbsa calculation mingche Pan (Tue Apr 26 2005 - 14:15:13 PDT)
- Re: AMBER: error in pbsa calculation Ray Luo (Tue Apr 26 2005 - 14:39:50 PDT)
- Re: AMBER: error in pbsa calculation mingche Pan (Wed Apr 27 2005 - 09:20:10 PDT)
- Re: AMBER: error in pbsa calculation Ray Luo (Wed Apr 27 2005 - 10:03:33 PDT)
- AMBER: capping amit.mbu.iisc.ernet.in (Wed Apr 27 2005 - 00:30:37 PDT)
- Re: AMBER: capping FyD (Wed Apr 27 2005 - 09:40:36 PDT)
- Re: AMBER: capping John Mongan (Wed Apr 27 2005 - 09:50:43 PDT)
- Re: AMBER: capping Bill Ross (Wed Apr 27 2005 - 14:00:50 PDT)
- Re: AMBER: capping amit.mbu.iisc.ernet.in (Wed Apr 27 2005 - 23:15:19 PDT)
- Re: AMBER: capping FyD (Thu Apr 28 2005 - 09:21:03 PDT)
- Re: AMBER: capping amit.mbu.iisc.ernet.in (Wed Apr 27 2005 - 23:15:19 PDT)
- Re: AMBER: capping Bill Ross (Wed Apr 27 2005 - 23:41:48 PDT)
- AMBER: emilia wu (Wed Apr 27 2005 - 19:35:59 PDT)
- Re: AMBER: Pyranose pucker parameters Thomas E. Cheatham, III (Wed Apr 27 2005 - 20:57:26 PDT)
- AMBER: mixture solvent model Huaer XC (Wed Apr 27 2005 - 21:13:11 PDT)
- AMBER: distance restraints mathew k varghese (Thu Apr 28 2005 - 00:00:16 PDT)
- AMBER: Problem with "Thermodynamic integration calculations" tutorial ,unsuspected error Maciej (Thu Apr 28 2005 - 00:41:21 PDT)
- AMBER: false bond created upon coordinate retrieval Stern, Julie (Thu Apr 28 2005 - 14:29:38 PDT)
- Re: AMBER: false bond created upon coordinate retrieval Bill Ross (Thu Apr 28 2005 - 15:00:38 PDT)
- AMBER: segmentation problem aanzellotti.mail2.vcu.edu (Thu Apr 28 2005 - 16:46:36 PDT)
- AMBER: Re: R.E.D. question FyD (Fri Apr 29 2005 - 13:21:34 PDT)
- AMBER: Odd Antechamber Behavior Kara Di Giorgio (Fri Apr 29 2005 - 21:48:01 PDT)
- AMBER: ipol=1 & use_pme= ?? Cenk Andac (Sat Apr 30 2005 - 06:26:57 PDT)
- Last message date: Sat Apr 30 2005 - 14:53:00 PDT
- Archived on: Mon Jan 05 2009 - 06:08:22 PST
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