Re: AMBER: parameters in gaff.dat

From: David A. Case <case.scripps.edu>
Date: Fri, 15 Apr 2005 13:31:56 -0700

On Fri, Apr 15, 2005, Lihua Wang wrote:
>
> Thanks for your reply. So you are saying atoms pairs such as nc/nd and
> cc/cd are of the same type, but in the context of bond angles and
> torsions, they are different due to conjugation (conjugated single or
> conjugated double bond)?

That sounds about right...the full explanation is in the paper cited.

....dac

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Received on Fri Apr 15 2005 - 21:53:00 PDT
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