Amber Archive Apr 2005 by author
447 messages
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Starting
Fri Apr 01 2005 - 05:53:01 PST,
Ending
Sat Apr 30 2005 - 14:53:00 PDT
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aanzellotti.mail2.vcu.edu
AMBER: segmentation problem
(Thu Apr 28 2005 - 16:46:36 PDT)
Adrian E. Roitberg
Re: AMBER: langevin, GB and simulated annealing?
(Mon Apr 18 2005 - 08:21:04 PDT)
Aknb
AMBER: serial and parallel
(Sun Apr 24 2005 - 04:35:37 PDT)
Amber
AMBER: what is wrong with my amber job or installation?
(Wed Apr 13 2005 - 11:57:56 PDT)
amit.mbu.iisc.ernet.in
Re: AMBER: capping
(Wed Apr 27 2005 - 23:15:19 PDT)
AMBER: capping
(Wed Apr 27 2005 - 00:30:37 PDT)
Ananda Rama Krishnan Selvaraj
AMBER: how to make the prepin file for dimer and clusters of organic molecule in Amber7
(Fri Apr 15 2005 - 01:11:27 PDT)
Re: AMBER: How to fix the torsion angles during energy minimization
(Fri Apr 01 2005 - 04:54:18 PST)
AMBER: How to fix the torsion angles during energy minimization
(Thu Mar 31 2005 - 22:42:27 PST)
Andreas Svrcek-Seiler
Re: AMBER: langevin, GB and simulated annealing - 2
(Wed Apr 20 2005 - 01:03:56 PDT)
Re: AMBER: About NAB
(Thu Apr 14 2005 - 10:03:49 PDT)
Re: AMBER: GB with Langevin dynamics problem 2
(Fri Apr 08 2005 - 10:55:48 PDT)
Re: AMBER: GB with Langevin dynamics problem
(Tue Apr 05 2005 - 10:04:08 PDT)
Re: AMBER: Sander minimization & dynamic question
(Mon Apr 04 2005 - 05:01:32 PDT)
Anthony Cruz
AMBER: AMBER Test
(Tue Apr 26 2005 - 03:36:27 PDT)
Arantxa Sanz
Re: AMBER: linit in mm-pbsa
(Fri Apr 08 2005 - 02:43:22 PDT)
Asim Okur
Re: AMBER: combine mdcrd using ptraj
(Wed Apr 06 2005 - 22:17:57 PDT)
Re: AMBER: force constant Unit used in TMD
(Mon Apr 04 2005 - 10:36:08 PDT)
Atro Tossavainen
Re: AMBER: Problems with protonate on Linux
(Tue Apr 05 2005 - 23:46:34 PDT)
AMBER: Problems with protonate on Linux
(Fri Apr 01 2005 - 05:09:32 PST)
Austin B. Yongye
Re: AMBER: RESP charges - multiple conformations
(Tue Apr 19 2005 - 05:43:45 PDT)
AMBER: RESP charges - multiple conformations
(Mon Apr 18 2005 - 19:54:20 PDT)
Re: AMBER: Antechamber -reorders atom sequence
(Fri Apr 15 2005 - 13:12:40 PDT)
AMBER: Antechamber -reorders atom sequence
(Thu Apr 14 2005 - 05:05:09 PDT)
Bill Ross
Re: AMBER: false bond created upon coordinate retrieval
(Thu Apr 28 2005 - 15:00:38 PDT)
Re: AMBER: capping
(Wed Apr 27 2005 - 23:41:48 PDT)
Re: AMBER: capping
(Wed Apr 27 2005 - 14:00:50 PDT)
Re: AMBER: Calculate vdw parameters for alkaline earth metal ions
(Fri Apr 22 2005 - 15:48:15 PDT)
Re: AMBER: carnal problem
(Fri Apr 15 2005 - 12:20:03 PDT)
Re: AMBER: carnal problem
(Fri Apr 15 2005 - 11:42:16 PDT)
Re: AMBER: carnal problem
(Fri Apr 15 2005 - 10:32:02 PDT)
Re: AMBER: periodic boundaries and repeating structure
(Thu Apr 14 2005 - 11:13:48 PDT)
Re: AMBER: ibelly not working
(Tue Apr 12 2005 - 11:11:28 PDT)
Re: AMBER: peptide side chain modification with LEAP
(Tue Apr 12 2005 - 09:22:40 PDT)
Re: AMBER: problems with "protonate"
(Tue Apr 12 2005 - 09:14:27 PDT)
Re: Re: AMBER: Fail to load the trajectory file.
(Mon Apr 11 2005 - 18:11:19 PDT)
Re: AMBER: Fail to load the trajectory file.
(Mon Apr 11 2005 - 17:41:52 PDT)
Re: AMBER: problems with "protonate"
(Mon Apr 11 2005 - 15:33:17 PDT)
Re: AMBER: breaking symmetry in minimization
(Mon Apr 11 2005 - 15:25:25 PDT)
Re: AMBER: Compile Error on Running Amber on AMD opterons in the Linux-based clusters
(Tue Apr 05 2005 - 09:26:34 PDT)
Re: AMBER: GB dynamics
(Fri Apr 01 2005 - 13:55:07 PST)
Brent Krueger
AMBER: Rep Exch. suggestion
(Mon Apr 18 2005 - 04:56:33 PDT)
bybaker.itsa.ucsf.edu
AMBER: solvate water box
(Wed Apr 13 2005 - 23:42:21 PDT)
Carlos Simmerling
Re: AMBER: strange VDWAALS and EEL energies calculated by pbsa
(Fri Apr 22 2005 - 09:05:42 PDT)
Re: AMBER: intramolecular nonbonded interactions in AMBER force field
(Thu Apr 21 2005 - 05:50:46 PDT)
Re: AMBER: intramolecular nonbonded interactions in AMBER force field
(Wed Apr 20 2005 - 15:28:08 PDT)
Re: AMBER: langevin, GB and simulated annealing?
(Mon Apr 18 2005 - 08:36:19 PDT)
Re: AMBER: the restart of replica exchange method (REM) simulations in AMBER8
(Sat Apr 16 2005 - 05:42:37 PDT)
Re: AMBER: Formatting a restraint file
(Thu Apr 14 2005 - 09:13:49 PDT)
Re: AMBER: Formatting a restraint file
(Wed Apr 13 2005 - 14:18:54 PDT)
Re: AMBER: Protein with structural ions
(Tue Apr 12 2005 - 09:09:48 PDT)
Re: AMBER: rst file problems
(Tue Apr 12 2005 - 06:39:02 PDT)
Re: AMBER: rst file problems
(Mon Apr 11 2005 - 06:22:41 PDT)
Re: AMBER: Two question about dielectric constant
(Mon Apr 11 2005 - 06:18:07 PDT)
Re: AMBER: average structure-ptraj
(Sat Apr 09 2005 - 08:02:02 PDT)
Re: AMBER: GB with Langevin dynamics problem 2
(Fri Apr 08 2005 - 12:03:14 PDT)
Re: AMBER: Disulfide bond
(Fri Apr 08 2005 - 07:54:46 PDT)
Re: AMBER: RE: system comparison for amber
(Thu Apr 07 2005 - 10:00:18 PDT)
Re: AMBER: GB with Langevin dynamics problem
(Tue Apr 05 2005 - 09:17:24 PDT)
Re: AMBER: force constant Unit used in TMD
(Mon Apr 04 2005 - 09:06:45 PDT)
Re: AMBER: Sander minimization & dynamic question
(Mon Apr 04 2005 - 04:48:26 PDT)
Cenk Andac
AMBER: ipol=1 & use_pme= ??
(Sat Apr 30 2005 - 06:26:57 PDT)
Re: AMBER: Induced dipole in AMBER8
(Mon Apr 25 2005 - 12:00:17 PDT)
AMBER: Induced dipole in AMBER8
(Fri Apr 22 2005 - 09:57:56 PDT)
chaiann ng
AMBER: Sander minimization & dynamic question
(Mon Apr 04 2005 - 03:45:48 PDT)
AMBER: solvateoct mymolecule CHCL3BOX 10 PROBLEM!!!
(Thu Mar 31 2005 - 20:30:40 PST)
Chen Hu
AMBER: Problem when converting AMBER trajectories to CHARMM format
(Sat Apr 23 2005 - 15:20:56 PDT)
Claudio Morgado
AMBER: GAFF: H type on carbon bearing a cyano group
(Tue Apr 19 2005 - 01:34:12 PDT)
AMBER: gaff atom types
(Fri Apr 15 2005 - 10:11:18 PDT)
Daisuke Katagiri
Re: AMBER: About Gaussian Key Words (fwd)
(Mon Apr 11 2005 - 17:03:36 PDT)
David A. Case
Re: AMBER: Induced dipole in AMBER8
(Fri Apr 22 2005 - 18:23:41 PDT)
Re: AMBER: Amber Installation
(Fri Apr 22 2005 - 12:14:01 PDT)
Re: AMBER: strange VDWAALS and EEL energies calculated by pbsa
(Fri Apr 22 2005 - 09:12:15 PDT)
Re: AMBER: intramolecular nonbonded interactions in AMBER force field
(Thu Apr 21 2005 - 08:42:10 PDT)
Re: AMBER: Nose-Hoover thermostat
(Thu Apr 21 2005 - 08:44:13 PDT)
Re: AMBER: ibelly not working
(Thu Apr 21 2005 - 08:36:40 PDT)
Re: AMBER: On the role of neutralizing ions in GB-MD and GBSA
(Thu Apr 21 2005 - 08:22:37 PDT)
Re: AMBER: GB and mm_pbsa.pl
(Wed Apr 20 2005 - 10:18:35 PDT)
Re: AMBER: GB and mm_pbsa.pl
(Wed Apr 20 2005 - 08:12:56 PDT)
Re: AMBER: langevin, GB and simulated annealing - 2
(Tue Apr 19 2005 - 17:04:56 PDT)
Re: AMBER: Non-Bonded Cutoff vs PME
(Tue Apr 19 2005 - 14:35:51 PDT)
Re: AMBER: The effect appling paches
(Tue Apr 19 2005 - 08:01:58 PDT)
AMBER: Amber compilation problem
(Tue Apr 19 2005 - 07:59:27 PDT)
Re: AMBER: Gibbs compilation problem
(Tue Apr 19 2005 - 07:50:12 PDT)
Re: AMBER: solvent accessible surface area
(Tue Apr 19 2005 - 07:43:24 PDT)
Re: AMBER: Amber8 installation on IBM (power4) with SUSE 9.1 Linux (IBM XLF compiler)
(Tue Apr 19 2005 - 07:40:30 PDT)
Re: AMBER: Re: Re: AMBER: ATTN REVISION
(Mon Apr 18 2005 - 21:37:13 PDT)
Re: AMBER: dielectric constant
(Mon Apr 18 2005 - 08:00:41 PDT)
Re: AMBER: ATTN REVISION
(Mon Apr 18 2005 - 07:57:58 PDT)
Re: AMBER: amber8/antechamber installation problem
(Sun Apr 17 2005 - 14:38:51 PDT)
Re: AMBER: parameters in gaff.dat
(Fri Apr 15 2005 - 13:31:56 PDT)
Re: AMBER: how to make the prepin file for dimer and clusters of organic molecule in Amber7
(Fri Apr 15 2005 - 08:25:56 PDT)
Re: AMBER: parameters in gaff.dat
(Thu Apr 14 2005 - 23:02:48 PDT)
Re: AMBER: About NAB
(Thu Apr 14 2005 - 18:33:26 PDT)
Re: AMBER: big fluctuation in MM-PBSA/GA
(Thu Apr 14 2005 - 16:33:00 PDT)
Re: AMBER: solvate water box
(Thu Apr 14 2005 - 09:30:11 PDT)
Re: AMBER: Formatting a restraint file
(Thu Apr 14 2005 - 09:28:23 PDT)
Re: AMBER: Antechamber -reorders atom sequence
(Thu Apr 14 2005 - 07:53:17 PDT)
Re: AMBER: Watson-Crick restraints
(Wed Apr 13 2005 - 22:37:16 PDT)
Re: AMBER: About NAB
(Wed Apr 13 2005 - 22:10:51 PDT)
Re: AMBER: MM_PBSA problem
(Wed Apr 13 2005 - 08:23:17 PDT)
Re: AMBER: a bimolecular reaction
(Tue Apr 12 2005 - 09:59:07 PDT)
Re: AMBER: GB with Langevin dynamics - solution
(Tue Apr 12 2005 - 09:56:34 PDT)
Re: AMBER: nscm
(Tue Apr 12 2005 - 08:55:58 PDT)
Re: AMBER: problems with "protonate"
(Mon Apr 11 2005 - 18:45:47 PDT)
Re: AMBER:FAD can't be minimized.
(Mon Apr 11 2005 - 07:58:45 PDT)
Re: AMBER: Protein with structural ions
(Mon Apr 11 2005 - 07:50:28 PDT)
Re: AMBER: Protein with structural ions
(Sun Apr 10 2005 - 21:04:52 PDT)
Re: AMBER: how to get the parameters for modified amino acid residue?
(Sat Apr 09 2005 - 22:29:09 PDT)
Re: AMBER: GB with Langevin dynamics problem 2
(Sat Apr 09 2005 - 22:34:48 PDT)
Re: AMBER: leap single precision
(Sat Apr 09 2005 - 22:27:52 PDT)
Re: AMBER: GB with Langevin dynamics problem 2
(Fri Apr 08 2005 - 10:48:27 PDT)
Re: AMBER: Protein with structural ions
(Fri Apr 08 2005 - 10:29:44 PDT)
AMBER: Announcment: Nucleic Acid Builder (NAB) version 5 is released
(Fri Apr 08 2005 - 09:52:54 PDT)
Re: AMBER: problems with "protonate"
(Fri Apr 08 2005 - 08:49:29 PDT)
Re: AMBER: Protein with structural ions
(Fri Apr 08 2005 - 08:41:22 PDT)
Re: AMBER: makeDIST_RST ERROR
(Fri Apr 08 2005 - 08:36:30 PDT)
Re: AMBER: value of SALTCON
(Thu Apr 07 2005 - 11:25:50 PDT)
Re: AMBER: FW: Amber installation
(Wed Apr 06 2005 - 14:39:42 PDT)
Re: AMBER: Problems with protonate on Linux
(Wed Apr 06 2005 - 09:19:11 PDT)
Re: AMBER: AMBER 8.0 problems with impose (tleap) on linux
(Tue Apr 05 2005 - 21:48:14 PDT)
Re: AMBER: doble C and N terminal
(Tue Apr 05 2005 - 14:25:10 PDT)
Re: AMBER: Compile Error on Running Amber on AMD opterons in the Linux-based clusters
(Tue Apr 05 2005 - 08:31:15 PDT)
Re: AMBER: single-stranded poly(rC) simulation
(Mon Apr 04 2005 - 23:31:35 PDT)
Re: AMBER: ff02EP + pol3 (2)
(Mon Apr 04 2005 - 23:28:22 PDT)
Re: AMBER:
(Mon Apr 04 2005 - 23:06:34 PDT)
Re: AMBER: problem with input files when using ff02EP + pol3
(Sun Apr 03 2005 - 22:18:29 PDT)
Re: AMBER: Problems with protonate on Linux
(Fri Apr 01 2005 - 09:34:17 PST)
Re: AMBER: How to fix the torsion angles during energy minimization
(Fri Apr 01 2005 - 09:24:37 PST)
Re: AMBER: scaleCharges with polarisable force fields
(Fri Apr 01 2005 - 08:31:22 PST)
Re: AMBER: GB dynamics
(Fri Apr 01 2005 - 08:16:46 PST)
David Case
Re: AMBER: A problem in TI approach - test case: meth2eth and eth2meth
(Thu Apr 28 2005 - 06:03:00 PDT)
Re: AMBER: langevin, GB and simulated annealing - 4
(Tue Apr 26 2005 - 08:44:32 PDT)
Re: AMBER: AMBER Test
(Tue Apr 26 2005 - 07:12:05 PDT)
Re: AMBER: langevin, GB and simulated annealing - 3
(Tue Apr 26 2005 - 07:06:08 PDT)
David LeBard
Re: AMBER: Sander/Mpich2 error with mpd_singinit
(Thu Apr 14 2005 - 13:17:54 PDT)
Delon Wilson
AMBER: RESP charges with Gaussian03 and Amber
(Mon Apr 18 2005 - 06:19:16 PDT)
AMBER: RESP charges with Gaussian03 and Amber
(Fri Apr 15 2005 - 13:57:19 PDT)
duan_list.albert.genomecenter.ucdavis.edu
Re: AMBER: a bimolecular reaction
(Tue Apr 12 2005 - 11:00:14 PDT)
Re: AMBER: nscm
(Tue Apr 12 2005 - 09:45:49 PDT)
Re: AMBER: About Gaussian Key Words (fwd)
(Thu Apr 07 2005 - 16:09:25 PDT)
Ed Pate
AMBER: problem with belly calculation restart
(Thu Apr 21 2005 - 17:28:59 PDT)
Re: AMBER: carnal problem
(Fri Apr 15 2005 - 12:30:26 PDT)
Re: AMBER: carnal problem
(Fri Apr 15 2005 - 11:53:37 PDT)
Re: AMBER: carnal problem
(Fri Apr 15 2005 - 11:10:37 PDT)
AMBER: carnal problem
(Fri Apr 15 2005 - 09:15:54 PDT)
emilia wu
AMBER:
(Wed Apr 27 2005 - 19:35:59 PDT)
Re: RE: Re: AMBER:
(Tue Apr 05 2005 - 05:25:42 PDT)
Re: Re: AMBER:
(Mon Apr 04 2005 - 23:43:49 PDT)
AMBER:
(Mon Apr 04 2005 - 07:11:48 PDT)
Eric Hu
Re: AMBER: big fluctuation in MM-PBSA/GA
(Fri Apr 15 2005 - 14:42:45 PDT)
Re: AMBER: big fluctuation in MM-PBSA/GA
(Fri Apr 15 2005 - 11:59:09 PDT)
Re: AMBER: big fluctuation in MM-PBSA/GA
(Thu Apr 14 2005 - 17:21:40 PDT)
AMBER: big fluctuation in MM-PBSA/GA
(Thu Apr 14 2005 - 15:54:05 PDT)
Re: AMBER: small target pressure in constant pressure dynamics
(Thu Apr 14 2005 - 15:26:23 PDT)
AMBER: small target pressure in constant pressure dynamics
(Thu Apr 14 2005 - 14:37:49 PDT)
Re: AMBER: a bimolecular reaction
(Wed Apr 13 2005 - 11:08:03 PDT)
Re: AMBER: a bimolecular reaction
(Tue Apr 12 2005 - 16:50:58 PDT)
AMBER: a bimolecular reaction
(Wed Apr 06 2005 - 10:14:23 PDT)
Eric Mullins
AMBER: FW: Amber installation
(Wed Apr 06 2005 - 08:36:20 PDT)
Fabien Cailliez
AMBER: strange VDWAALS and EEL energies calculated by pbsa
(Fri Apr 22 2005 - 08:56:41 PDT)
AMBER: Warning: Error opening "New" file from subroutine OPNMRG in pmemd
(Thu Apr 14 2005 - 06:05:32 PDT)
Re: AMBER: MM_PBSA problem
(Tue Apr 12 2005 - 09:50:14 PDT)
AMBER: linit in mm-pbsa
(Fri Apr 08 2005 - 02:08:52 PDT)
AMBER: RADIOPT=1
(Thu Apr 07 2005 - 06:19:09 PDT)
Furse, Kristina Elisabet
Re: AMBER: Formatting a restraint file
(Thu Apr 14 2005 - 13:02:20 PDT)
Re: AMBER: Formatting a restraint file
(Wed Apr 13 2005 - 22:06:49 PDT)
Re: AMBER: rst file problems
(Tue Apr 12 2005 - 13:39:35 PDT)
FyD
AMBER: Re: R.E.D. question
(Fri Apr 29 2005 - 13:21:34 PDT)
Re: AMBER: capping
(Thu Apr 28 2005 - 09:21:03 PDT)
Re: AMBER: capping
(Wed Apr 27 2005 - 09:40:36 PDT)
Re: AMBER: How to deal with the Non-standard residue
(Mon Apr 25 2005 - 13:07:33 PDT)
Re: AMBER: RESP charges - multiple conformations
(Tue Apr 19 2005 - 07:26:48 PDT)
Re: AMBER: RESP charges - multiple conformations
(Mon Apr 18 2005 - 22:44:04 PDT)
Re: AMBER: RESP charges with Gaussian03 and Amber
(Fri Apr 15 2005 - 15:16:05 PDT)
Re: AMBER: Antechamber -reorders atom sequence
(Fri Apr 15 2005 - 09:10:27 PDT)
Re: AMBER: Disulfide bond
(Fri Apr 08 2005 - 09:09:03 PDT)
Re: AMBER: how to get the parameters for modified amino acid residue?
(Fri Apr 08 2005 - 09:03:34 PDT)
Guanglei Cui
Re: AMBER: the restarting error
(Mon Apr 25 2005 - 07:37:50 PDT)
Re: AMBER: intramolecular nonbonded interactions in AMBER force field
(Fri Apr 22 2005 - 06:52:53 PDT)
Re: AMBER: Rep Exch. suggestion
(Mon Apr 18 2005 - 06:37:37 PDT)
Re: AMBER: SollvateBox with ethanol
(Fri Apr 15 2005 - 10:50:20 PDT)
Re: AMBER: leap single precision
(Fri Apr 08 2005 - 09:19:38 PDT)
AMBER: leap single precision
(Thu Apr 07 2005 - 11:04:20 PDT)
Guangyu Sun
Re: AMBER: No. of Snapshots in MM/GB/SA
(Tue Apr 12 2005 - 11:17:35 PDT)
Guillermo Mulliert Carlín
AMBER: AMBER 8.0 problems with impose (tleap) on linux
(Mon Apr 04 2005 - 23:35:17 PDT)
Hannes Barsch
AMBER: peptide side chain modification with LEAP
(Tue Apr 12 2005 - 07:19:53 PDT)
Holger Gohlke
Re: AMBER: MM_PBSA error
(Mon Apr 11 2005 - 23:30:24 PDT)
Re: AMBER: MM_PBSA error
(Mon Apr 11 2005 - 13:49:37 PDT)
hornak.csb.sunysb.edu
Re: AMBER: atommask error
(Fri Apr 29 2005 - 00:41:09 PDT)
Huaer XC
AMBER: mixture solvent model
(Wed Apr 27 2005 - 21:13:11 PDT)
AMBER: Solvate with mixture of ethanol and water(Newbie question)
(Tue Apr 26 2005 - 22:41:00 PDT)
AMBER: SollvateBox with ethanol
(Fri Apr 15 2005 - 09:21:01 PDT)
Husni Fattayer
Re: AMBER: mm_pbsa problem
(Wed Apr 27 2005 - 08:09:40 PDT)
AMBER: mm_pbsa problem
(Mon Apr 25 2005 - 13:59:22 PDT)
Hwankyu Lee
Re: AMBER: doesn't work in pmemd, and no output in parallel simulations
(Tue Apr 26 2005 - 19:46:09 PDT)
AMBER: doesn't work in pmemd, and no output in parallel simulations
(Tue Apr 26 2005 - 13:35:26 PDT)
Re: AMBER: A question on connecting residues in xleap
(Mon Apr 11 2005 - 07:49:47 PDT)
Re: AMBER: A question on connecting residues in xleap
(Sun Apr 10 2005 - 14:22:16 PDT)
AMBER: A question on connecting residues in xleap
(Sun Apr 10 2005 - 09:54:55 PDT)
Ilyas Yildirim
Re: AMBER: A problem in TI approach - test case: meth2eth and eth2meth
(Thu Apr 28 2005 - 17:00:11 PDT)
Re: AMBER: A problem in TI approach - test case: meth2eth and eth2meth
(Thu Apr 28 2005 - 16:34:48 PDT)
Re: AMBER: A problem in TI approach - test case: meth2eth and eth2meth
(Wed Apr 27 2005 - 21:34:32 PDT)
AMBER: A problem in TI approach - test case: meth2eth and eth2meth
(Mon Apr 25 2005 - 18:47:19 PDT)
Re: AMBER: Free energy pertubation (thermodynamic intergration)
(Mon Apr 25 2005 - 13:43:36 PDT)
Re: AMBER: About NAB
(Thu Apr 14 2005 - 17:19:14 PDT)
AMBER: About NAB
(Wed Apr 13 2005 - 17:19:32 PDT)
AMBER: nscm
(Tue Apr 12 2005 - 07:55:50 PDT)
Jack Lei
Re: AMBER: coordinates translation
(Sun Apr 24 2005 - 16:51:16 PDT)
Jinzhi Lei
Re: Re: AMBER: Fail to load the trajectory file.
(Tue Apr 12 2005 - 13:54:52 PDT)
Re: Re: Re: AMBER: Fail to load the trajectory file.
(Mon Apr 11 2005 - 18:53:50 PDT)
Re: Re: AMBER: Fail to load the trajectory file.
(Mon Apr 11 2005 - 18:00:14 PDT)
AMBER: Fail to load the trajectory file.
(Mon Apr 11 2005 - 17:36:34 PDT)
Jiri Matousek
Re: AMBER: solvateoct mymolecule CHCL3BOX 10 PROBLEM!!!
(Thu Mar 31 2005 - 23:37:39 PST)
Joe Nolan
AMBER: Sander bomb - atom out of bounds
(Thu Apr 21 2005 - 10:46:01 PDT)
AMBER: Sander/Mpich2 error with mpd_singinit
(Thu Apr 14 2005 - 13:00:09 PDT)
John
RE: AMBER: solvent accessible surface area
(Tue Apr 19 2005 - 05:22:04 PDT)
AMBER: solvent accessible surface area
(Tue Apr 19 2005 - 03:45:40 PDT)
AMBER: surface area
(Mon Apr 04 2005 - 03:35:58 PDT)
John Mongan
Re: AMBER: capping
(Wed Apr 27 2005 - 09:50:43 PDT)
John Silvio Vieceli
AMBER: intramolecular nonbonded interactions in AMBER force field
(Wed Apr 20 2005 - 15:06:48 PDT)
Joseph W.Toporowski
AMBER: ptraj, hbond problem
(Tue Apr 12 2005 - 17:07:35 PDT)
Junmei Wang
RE: AMBER: ATTN REVISION
(Wed Apr 20 2005 - 07:31:47 PDT)
RE: AMBER: antechamber for cyano group
(Tue Apr 19 2005 - 09:28:59 PDT)
RE: AMBER: gaff atom types
(Tue Apr 19 2005 - 09:18:44 PDT)
RE: AMBER: Re: Re: AMBER: ATTN REVISION
(Tue Apr 19 2005 - 09:08:58 PDT)
Kara Di Giorgio
AMBER: Odd Antechamber Behavior
(Fri Apr 29 2005 - 21:48:01 PDT)
Re: AMBER: Formatting a restraint file
(Thu Apr 14 2005 - 09:25:18 PDT)
Re: AMBER: Formatting a restraint file
(Thu Apr 14 2005 - 08:26:17 PDT)
Re: AMBER: Formatting a restraint file
(Wed Apr 13 2005 - 17:31:25 PDT)
Re: AMBER: MM-PBSA in protein-Zn-ligand system
(Tue Apr 12 2005 - 19:50:20 PDT)
AMBER: Protein With Structural Ions
(Tue Apr 12 2005 - 10:47:52 PDT)
Re: AMBER: Protein with structural ions
(Tue Apr 12 2005 - 09:59:40 PDT)
RE: AMBER: Protein with structural ions
(Tue Apr 12 2005 - 08:51:32 PDT)
Re: AMBER: Protein with structural ions
(Mon Apr 11 2005 - 08:40:45 PDT)
Re: AMBER: Protein with structural ions
(Sun Apr 10 2005 - 21:47:29 PDT)
Re: AMBER: Protein with structural ions
(Sun Apr 10 2005 - 20:05:08 PDT)
Re: AMBER: Protein with structural ions
(Fri Apr 08 2005 - 11:55:41 PDT)
Re: AMBER: Protein with structural ions
(Fri Apr 08 2005 - 09:30:26 PDT)
Re: AMBER: Protein with structural ions
(Thu Apr 07 2005 - 22:29:26 PDT)
Kara Wald
AMBER: Formatting a restraint file
(Wed Apr 13 2005 - 13:57:24 PDT)
AMBER: Protein with structural ions
(Tue Apr 05 2005 - 14:29:46 PDT)
Katagiri Daisuke
AMBER: About Gaussian Key Words
(Wed Apr 06 2005 - 20:10:12 PDT)
Kateryna Miroshnychenko
AMBER: Re:Re:single-stranded poly(rC) simulation
(Tue Apr 05 2005 - 10:37:54 PDT)
AMBER: single-stranded poly(rC) simulation
(Mon Apr 04 2005 - 06:49:39 PDT)
AMBER: helical parameters obtaining
(Sat Apr 02 2005 - 03:08:17 PST)
Kenley Barrett
AMBER: Calculate vdw parameters for alkaline earth metal ions
(Fri Apr 22 2005 - 15:19:23 PDT)
Re: AMBER: problems with "protonate"
(Mon Apr 11 2005 - 14:20:47 PDT)
AMBER: problems with "protonate"
(Thu Apr 07 2005 - 19:27:07 PDT)
Lihua Wang
Re: AMBER: parameters in gaff.dat
(Fri Apr 15 2005 - 11:50:04 PDT)
AMBER: parameters in gaff.dat
(Thu Apr 14 2005 - 22:21:29 PDT)
Re: AMBER: Two question about dielectric constant
(Mon Apr 11 2005 - 10:04:24 PDT)
Re: AMBER: combine mdcrd using ptraj
(Thu Apr 07 2005 - 00:45:18 PDT)
Lina Nilsson
AMBER: implementing AMBER in NAMD
(Thu Apr 28 2005 - 07:23:16 PDT)
AMBER: how to make a nonsymmetric box around the solute
(Tue Apr 05 2005 - 00:56:44 PDT)
luckyang.gmail.com
AMBER: Silicon related parameters
(Tue Apr 12 2005 - 09:38:35 PDT)
lv haiting
AMBER: How to deal with the Non-standard residue
(Mon Apr 25 2005 - 01:18:08 PDT)
Re: AMBER: ATTN REVISION
(Tue Apr 19 2005 - 19:08:14 PDT)
Maciej
AMBER: Problem with "Thermodynamic integration calculations" tutorial ,unsuspected error
(Thu Apr 28 2005 - 00:41:21 PDT)
AMBER: Re:Gibbs compilation problem
(Tue Apr 26 2005 - 00:05:31 PDT)
AMBER: Free energy
(Tue Apr 26 2005 - 00:01:16 PDT)
AMBER: Gibbs compilation problem
(Tue Apr 19 2005 - 04:36:52 PDT)
AMBER: New parametrs
(Mon Apr 18 2005 - 22:38:51 PDT)
mathew k varghese
AMBER: distance restraints
(Thu Apr 28 2005 - 00:00:16 PDT)
Re: AMBER: rst file problems
(Mon Apr 11 2005 - 20:13:21 PDT)
AMBER: rst file problems
(Mon Apr 11 2005 - 03:03:41 PDT)
AMBER: value of SALTCON
(Wed Apr 06 2005 - 21:29:01 PDT)
AMBER: GB dynamics
(Thu Mar 31 2005 - 20:01:30 PST)
michael chen
AMBER: Disulfide bond
(Fri Apr 08 2005 - 07:36:41 PDT)
mingche Pan
Re: AMBER: error in pbsa calculation
(Wed Apr 27 2005 - 09:20:10 PDT)
AMBER: error in pbsa calculation
(Tue Apr 26 2005 - 14:15:13 PDT)
mmv
AMBER: mean structure calculation
(Fri Apr 22 2005 - 02:17:20 PDT)
mrbroad.ilstu.edu
AMBER: Free energy pertubation (thermodynamic intergration)
(Mon Apr 25 2005 - 09:20:35 PDT)
Nelson Fonseca
AMBER: PB Bomb in circle(): Stored surface points over limit
(Fri Apr 22 2005 - 05:56:57 PDT)
Re: AMBER: GB and mm_pbsa.pl
(Wed Apr 20 2005 - 09:05:12 PDT)
AMBER: GB and mm_pbsa.pl
(Wed Apr 20 2005 - 04:48:48 PDT)
Re: AMBER: MM_PBSA problem
(Tue Apr 12 2005 - 14:15:00 PDT)
Re: AMBER: MM_PBSA problem
(Tue Apr 12 2005 - 09:20:53 PDT)
Nina Fischer
AMBER: dielectric constant
(Mon Apr 18 2005 - 01:22:34 PDT)
nlxc
AMBER: antechamber for cyano group
(Thu Apr 14 2005 - 11:03:35 PDT)
Oliver Hucke
Re: AMBER: Protein with structural ions
(Tue Apr 05 2005 - 14:42:29 PDT)
opitz.che.udel.edu
AMBER: xleap, lib file question
(Wed Apr 13 2005 - 14:36:51 PDT)
pascal.baillod.epfl.ch
AMBER: langevin, GB and simulated annealing - 4
(Tue Apr 26 2005 - 08:23:20 PDT)
AMBER: langevin, GB and simulated annealing - 3
(Tue Apr 26 2005 - 03:37:16 PDT)
AMBER: langevin, GB and simulated annealing - 2
(Tue Apr 19 2005 - 14:07:23 PDT)
AMBER: langevin, GB and simulated annealing?
(Mon Apr 18 2005 - 08:14:08 PDT)
Pavan Ghatty
AMBER: Warnings as a file
(Sun Apr 10 2005 - 21:37:21 PDT)
Peter Gannett
AMBER: oxo-heme
(Fri Apr 01 2005 - 14:32:47 PST)
Peter Varnai
Re: AMBER: GB with Langevin dynamics - solution
(Tue Apr 12 2005 - 10:39:54 PDT)
AMBER: GB with Langevin dynamics - solution
(Mon Apr 11 2005 - 10:18:13 PDT)
AMBER: GB with Langevin dynamics problem 2
(Fri Apr 08 2005 - 09:29:08 PDT)
AMBER: GB with Langevin dynamics problem
(Tue Apr 05 2005 - 09:04:15 PDT)
Petr Kulhanek
Re: AMBER: A problem in TI approach - test case: meth2eth and eth2meth
(Thu Apr 28 2005 - 00:02:47 PDT)
Phineus Markwick
AMBER: re: about run time in GB and PB
(Thu Apr 21 2005 - 07:29:33 PDT)
Re: AMBER: about run time in GB and PB
(Thu Apr 21 2005 - 07:10:20 PDT)
Re: AMBER: about run time in GB and PB
(Thu Apr 21 2005 - 03:15:57 PDT)
Re: AMBER: about run time in GB and PB
(Thu Apr 21 2005 - 01:26:26 PDT)
AMBER: ff02EP + pol3 (2)
(Mon Apr 04 2005 - 05:06:36 PDT)
AMBER: problem with input files when using ff02EP + pol3
(Sun Apr 03 2005 - 05:35:28 PDT)
AMBER: scaleCharges with polarisable force fields
(Fri Apr 01 2005 - 04:57:43 PST)
pmullins
AMBER: Amber Installation
(Fri Apr 22 2005 - 11:28:34 PDT)
Ray Luo
Re: AMBER: error in pbsa calculation
(Wed Apr 27 2005 - 10:03:33 PDT)
Re: AMBER: error in pbsa calculation
(Tue Apr 26 2005 - 14:39:50 PDT)
Re: AMBER: strange VDWAALS and EEL energies calculated by pbsa
(Thu Apr 21 2005 - 05:18:17 PDT)
Re: AMBER: solvent accessible surface area
(Mon Apr 18 2005 - 19:12:54 PDT)
Re: AMBER: linit in mm-pbsa
(Thu Apr 07 2005 - 21:30:06 PDT)
Robert Duke
Re: AMBER: doesn't work in pmemd, and no output in parallel simulations
(Wed Apr 27 2005 - 05:06:46 PDT)
Re: AMBER: doesn't work in pmemd, and no output in parallel simulations
(Tue Apr 26 2005 - 14:24:04 PDT)
Re: AMBER: Compiling on dual-opteron with pathscale 2.1 on RHEL 4 AS
(Sat Apr 02 2005 - 16:42:47 PST)
Ross Walker
RE: AMBER: serial and parallel
(Sun Apr 24 2005 - 11:49:38 PDT)
RE: AMBER: Sander bomb - atom out of bounds
(Thu Apr 21 2005 - 11:02:18 PDT)
RE: AMBER: intramolecular nonbonded interactions in AMBER force field
(Wed Apr 20 2005 - 15:33:41 PDT)
AMBER: Re: RE: AMBER:Bond lengths aren't reasonable after minimisation.
(Wed Apr 20 2005 - 10:04:03 PDT)
RE: AMBER:Bond lengths aren't reasonable after minimisation.
(Mon Apr 18 2005 - 09:55:54 PDT)
RE: AMBER: xleap, lib file question
(Wed Apr 13 2005 - 15:07:04 PDT)
RE: AMBER: what is wrong with my amber job or installation?
(Wed Apr 13 2005 - 13:46:01 PDT)
RE: AMBER: peptide side chain modification with LEAP
(Tue Apr 12 2005 - 08:45:23 PDT)
RE: AMBER: A question on connecting residues in xleap
(Mon Apr 11 2005 - 10:13:15 PDT)
RE: AMBER: A question on connecting residues in xleap
(Sun Apr 10 2005 - 22:00:34 PDT)
RE: AMBER: A question on connecting residues in xleap
(Sun Apr 10 2005 - 11:25:16 PDT)
AMBER: RE: system comparison for amber
(Thu Apr 07 2005 - 09:41:06 PDT)
S.Sundar Raman
AMBER: about equilibration dynamics
(Mon Apr 18 2005 - 00:18:10 PDT)
AMBER: freee energy calculation without minimised structure
(Wed Apr 13 2005 - 00:00:08 PDT)
Sagar D Khare
AMBER: writing MASKs
(Fri Apr 22 2005 - 07:58:24 PDT)
AMBER: No. of Snapshots in MM/GB/SA
(Tue Apr 12 2005 - 10:48:44 PDT)
Sam Moors
AMBER: Nose-Hoover thermostat
(Thu Apr 21 2005 - 05:40:44 PDT)
scopio
Re: AMBER: radius parameter for F atom
(Mon Apr 25 2005 - 18:36:16 PDT)
Re: AMBER: Warnings as a file
(Sun Apr 10 2005 - 22:03:39 PDT)
Scott Brozell
Re: AMBER: leap single precision
(Fri Apr 08 2005 - 00:07:31 PDT)
Scott E. Boesch
AMBER: the restart of replica exchange method (REM) simulations in AMBER8
(Fri Apr 15 2005 - 14:24:24 PDT)
Sergio E. Wong
Re: AMBER: atommask error
(Fri Apr 29 2005 - 10:19:25 PDT)
AMBER: atommask error
(Thu Apr 28 2005 - 23:02:05 PDT)
Shekter, Lee
AMBER: Dual Xeon EM64T Intel Fortran Compiler
(Mon Apr 18 2005 - 11:17:58 PDT)
shuli
Re: AMBER: All the tests passed except prmtop and prepin...
(Mon Apr 04 2005 - 07:56:23 PDT)
Re: AMBER: All the tests passed except prmtop and prepin...
(Sun Apr 03 2005 - 08:24:47 PDT)
Sichun Yang
Re: AMBER: Free energy pertubation (thermodynamic intergration)
(Mon Apr 25 2005 - 09:55:16 PDT)
Soo Joo
AMBER: Amber8 installation on IBM (power4) with SUSE 9.1 Linux (IBM XLF compiler)
(Tue Apr 19 2005 - 02:36:26 PDT)
Stefano Federico Massimiliano Pieraccini (Stefano.Pieraccini)
AMBER: interaction between residues
(Wed Apr 20 2005 - 07:27:31 PDT)
AMBER: doble C and N terminal
(Tue Apr 05 2005 - 02:45:58 PDT)
Stern, Julie
AMBER: false bond created upon coordinate retrieval
(Thu Apr 28 2005 - 14:29:38 PDT)
AMBER: ibelly not working
(Wed Apr 20 2005 - 12:40:28 PDT)
AMBER: periodic boundaries and repeating structure
(Thu Apr 14 2005 - 10:55:09 PDT)
AMBER: vdw or center box dimensions, periodicity, and the jagged edge
(Tue Apr 12 2005 - 10:30:38 PDT)
AMBER: ibelly not working
(Tue Apr 12 2005 - 09:52:56 PDT)
AMBER: breaking symmetry in minimization
(Mon Apr 11 2005 - 13:58:53 PDT)
Steve Seibold
AMBER: Moil-view and Quicktime movie
(Thu Apr 21 2005 - 07:55:01 PDT)
thenmalar
AMBER: tleap and water
(Wed Apr 20 2005 - 01:13:58 PDT)
Thomas E. Cheatham, III
Re: AMBER: Pyranose pucker parameters
(Wed Apr 27 2005 - 20:57:26 PDT)
Re: AMBER: Problem when converting AMBER trajectories to CHARMM format
(Sat Apr 23 2005 - 16:33:48 PDT)
Re: AMBER: intramolecular nonbonded interactions in AMBER force field
(Thu Apr 21 2005 - 07:50:24 PDT)
Re: AMBER: Non-Bonded Cutoff vs PME
(Wed Apr 20 2005 - 07:53:38 PDT)
Re: AMBER: tleap and water
(Wed Apr 20 2005 - 07:28:33 PDT)
Re: AMBER: Non-Bonded Cutoff vs PME
(Tue Apr 19 2005 - 16:47:10 PDT)
Re: AMBER: big fluctuation in MM-PBSA/GA
(Thu Apr 14 2005 - 16:53:48 PDT)
Re: AMBER: small target pressure in constant pressure dynamics
(Thu Apr 14 2005 - 15:09:18 PDT)
Re: AMBER: Fail to load the trajectory file.
(Mon Apr 11 2005 - 19:08:11 PDT)
Re: AMBER: Re:Re:single-stranded poly(rC) simulation
(Tue Apr 05 2005 - 11:32:15 PDT)
Re: AMBER: trajectory alignment using ptraj
(Fri Apr 01 2005 - 13:38:50 PST)
Re: AMBER: trajectory alignment using ptraj
(Fri Apr 01 2005 - 12:39:07 PST)
Re: AMBER: trajectory alignment using ptraj
(Fri Apr 01 2005 - 09:47:30 PST)
Thomas Steinbrecher
Re: AMBER: A problem in TI approach - test case: meth2eth and eth2meth
(Tue Apr 26 2005 - 01:37:01 PDT)
Tim Meyer
AMBER: rdparm
(Tue Apr 12 2005 - 07:23:55 PDT)
Re: AMBER: Protein with structural ions
(Thu Apr 07 2005 - 07:05:15 PDT)
Re: AMBER: surface area
(Mon Apr 04 2005 - 08:38:12 PDT)
tpatko
AMBER: Re: AMBER Test Error (Follow Up)
(Sun Apr 24 2005 - 17:55:18 PDT)
AMBER: AMBER Test Error
(Sun Apr 24 2005 - 17:31:42 PDT)
Viktor Hornak
Re: AMBER: question about TGMD: vlimit exceeded for step
(Fri Apr 08 2005 - 15:24:13 PDT)
Re: AMBER: question about TGMD: vlimit exceeded for step
(Fri Apr 08 2005 - 13:47:40 PDT)
Re: AMBER: force constant Unit used in TMD
(Mon Apr 04 2005 - 09:53:23 PDT)
Vineet Pande
RE: AMBER: writing MASKs
(Fri Apr 22 2005 - 08:45:43 PDT)
Re: AMBER: intramolecular nonbonded interactions in AMBER force field
(Thu Apr 21 2005 - 06:26:30 PDT)
Re: AMBER: intramolecular nonbonded interactions in AMBER force field
(Thu Apr 21 2005 - 01:33:19 PDT)
Re: AMBER: Non-Bonded Cutoff vs PME
(Wed Apr 20 2005 - 02:17:20 PDT)
AMBER: Non-Bonded Cutoff vs PME
(Tue Apr 19 2005 - 09:13:26 PDT)
RE: AMBER: About Gaussian Key Words
(Thu Apr 07 2005 - 01:36:04 PDT)
Wei Zhang
Re: AMBER: Compile Error on Running Amber on AMD opterons in the Linux-based clusters
(Tue Apr 05 2005 - 00:49:38 PDT)
Wells, David H
RE: Re: AMBER:
(Tue Apr 05 2005 - 00:13:56 PDT)
Wen Li
Re: AMBER: trajectory alignment using ptraj
(Fri Apr 01 2005 - 18:42:43 PST)
Re: AMBER: trajectory alignment using ptraj
(Fri Apr 01 2005 - 13:37:57 PST)
Re: AMBER: trajectory alignment using ptraj
(Fri Apr 01 2005 - 13:23:14 PST)
Re: AMBER: trajectory alignment using ptraj
(Fri Apr 01 2005 - 12:12:34 PST)
Re: AMBER: trajectory alignment using ptraj
(Fri Apr 01 2005 - 10:42:36 PST)
AMBER: trajectory alignment using ptraj
(Fri Apr 01 2005 - 09:38:02 PST)
Wu Yingliang
Re: Re: AMBER: On the role of neutralizing ions in GB-MD and GBSA
(Thu Apr 21 2005 - 19:50:09 PDT)
AMBER: On the role of neutralizing ions in GB-MD and GBSA
(Thu Apr 21 2005 - 03:16:29 PDT)
AMBER: On the role of neutralizing ions in GB-MD and GBSA
(Thu Apr 21 2005 - 03:26:05 PDT)
AMBER: Compile Error on Running Amber on AMD opterons in the Linux-based clusters
(Mon Apr 04 2005 - 23:18:11 PDT)
Xavier Deupi
AMBER: local dielectric constant
(Mon Apr 18 2005 - 18:17:40 PDT)
xhu1.memphis.edu
Re: AMBER: question about TGMD: vlimit exceeded for step
(Fri Apr 08 2005 - 16:04:17 PDT)
Re: AMBER: question about TGMD: vlimit exceeded for step
(Fri Apr 08 2005 - 14:55:05 PDT)
AMBER: question about TGMD: vlimit exceeded for step
(Fri Apr 08 2005 - 13:31:10 PDT)
Re: AMBER: force constant Unit used in TMD
(Mon Apr 04 2005 - 10:59:02 PDT)
Re: AMBER: force constant Unit used in TMD
(Mon Apr 04 2005 - 10:28:36 PDT)
Re: AMBER: force constant Unit used in TMD
(Mon Apr 04 2005 - 09:33:01 PDT)
AMBER: force constant Unit used in TMD
(Mon Apr 04 2005 - 08:05:30 PDT)
AMBER: reference of Targeted MD
(Fri Apr 01 2005 - 13:52:59 PST)
Xin Hu
AMBER: How to restart MM_PBSA or doing the statistics only
(Tue Apr 26 2005 - 09:00:05 PDT)
Re: AMBER: a problem with mm_pbsa
(Tue Apr 19 2005 - 07:44:35 PDT)
Re: AMBER: amber8/antechamber installation problem
(Tue Apr 19 2005 - 07:14:41 PDT)
AMBER: amber8/antechamber installation problem
(Sat Apr 16 2005 - 18:39:07 PDT)
Re: AMBER: big fluctuation in MM-PBSA/GA
(Fri Apr 15 2005 - 13:53:02 PDT)
Re: AMBER: big fluctuation in MM-PBSA/GA
(Fri Apr 15 2005 - 11:17:28 PDT)
Re: AMBER: MM_PBSA problem
(Wed Apr 13 2005 - 10:49:05 PDT)
Re: AMBER: MM_PBSA problem
(Wed Apr 13 2005 - 08:28:17 PDT)
Re: AMBER: MM_PBSA problem
(Tue Apr 12 2005 - 12:36:07 PDT)
Re: AMBER: MM_PBSA problem
(Tue Apr 12 2005 - 12:31:45 PDT)
AMBER: MM_PBSA problem
(Tue Apr 12 2005 - 09:09:36 PDT)
Re: AMBER: MM_PBSA error
(Mon Apr 11 2005 - 15:33:51 PDT)
AMBER: MM_PBSA error
(Mon Apr 11 2005 - 11:46:30 PDT)
xueping
Re: AMBER: average structure-ptraj
(Sun Apr 10 2005 - 02:10:55 PDT)
Re: AMBER: average structure-ptraj
(Sun Apr 10 2005 - 01:50:19 PDT)
AMBER: average structure-ptraj
(Sat Apr 09 2005 - 01:23:23 PDT)
Re: AMBER: combine mdcrd using ptraj
(Thu Apr 07 2005 - 02:13:59 PDT)
Re: AMBER: combine mdcrd using ptraj
(Wed Apr 06 2005 - 23:59:54 PDT)
AMBER: combine mdcrd using ptraj
(Wed Apr 06 2005 - 21:41:48 PDT)
Y. Xu
Re: Re: AMBER: Protein with structural ions
(Thu Apr 07 2005 - 23:39:45 PDT)
AMBER: makeDIST_RST ERROR
(Thu Apr 07 2005 - 19:14:19 PDT)
Yagi Toru
AMBER: The effect appling paches
(Tue Apr 19 2005 - 06:11:54 PDT)
Ye MEI
Re: Re: AMBER: radius parameter for F atom
(Tue Apr 26 2005 - 06:30:07 PDT)
AMBER: radius parameter for F atom
(Mon Apr 25 2005 - 10:05:06 PDT)
AMBER: coordinates translation
(Sun Apr 24 2005 - 09:26:39 PDT)
AMBER: a problem with mm_pbsa
(Tue Apr 19 2005 - 07:23:01 PDT)
AMBER: Does anybody know the experimental solvation free energies of Efavirenz and some other DPC drugs
(Tue Apr 12 2005 - 08:19:37 PDT)
ying xiong
AMBER: how to get the parameters for modified amino acid residue?
(Thu Apr 07 2005 - 20:31:14 PDT)
Yong Xu
Re: RE: AMBER: about run time in GB and PB
(Thu Apr 21 2005 - 06:17:19 PDT)
Re: Re: AMBER: about run time in GB and PB
(Thu Apr 21 2005 - 01:55:41 PDT)
AMBER: about run time in GB and PB
(Thu Apr 21 2005 - 01:06:27 PDT)
AMBER:
(Tue Apr 19 2005 - 19:57:44 PDT)
Re: Re: AMBER: MM-PBSA in protein-Zn-ligand system
(Tue Apr 12 2005 - 20:17:00 PDT)
AMBER: MM-PBSA in protein-Zn-ligand system
(Tue Apr 12 2005 - 18:37:55 PDT)
Yong Duan
RE: AMBER: about run time in GB and PB
(Thu Apr 21 2005 - 01:57:32 PDT)
Large files to AMBER, RE: AMBER: Re: RE: AMBER:Bond lengths aren't reasonable after minimisation.
(Wed Apr 20 2005 - 08:16:55 PDT)
RE: AMBER: small target pressure in constant pressure dynamics
(Thu Apr 14 2005 - 16:30:09 PDT)
RE: AMBER: a bimolecular reaction
(Wed Apr 13 2005 - 12:51:08 PDT)
RE: AMBER: freee energy calculation without minimised structure
(Wed Apr 13 2005 - 00:40:26 PDT)
Re: AMBER: a bimolecular reaction
(Tue Apr 12 2005 - 17:22:51 PDT)
Yong Xu
Re: AMBER: about run time in GB and PB
(Fri Apr 22 2005 - 01:19:05 PDT)
Re: Re: AMBER: Protein with structural ions
(Tue Apr 05 2005 - 21:34:55 PDT)
YoungJin Cho
AMBER: Watson-Crick restraints
(Wed Apr 13 2005 - 07:43:22 PDT)
zhli_2000
AMBER: Re: RE: AMBER:Bond lengths aren't reasonable after minimisation.
(Wed Apr 20 2005 - 06:52:18 PDT)
zhli_2000.126.com
Re: AMBER: the restarting error
(Tue Apr 26 2005 - 03:54:44 PDT)
AMBER: the restarting error
(Mon Apr 25 2005 - 07:08:02 PDT)
AMBER:Bond lengths aren't reasonable after minimisation.
(Mon Apr 18 2005 - 03:39:22 PDT)
AMBER:FAD can't be minimized.
(Mon Apr 11 2005 - 05:48:15 PDT)
吕海婷
AMBER: Re: Re: AMBER: ATTN REVISION
(Mon Apr 18 2005 - 18:38:02 PDT)
AMBER: ATTN REVISION
(Mon Apr 18 2005 - 01:19:46 PDT)
烨 武
AMBER: Two question about dielectric constant
(Mon Apr 11 2005 - 01:02:10 PDT)
Last message date
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Sat Apr 30 2005 - 14:53:00 PDT
Archived on
: Mon Dec 23 2024 - 05:53:21 PST
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