Re: AMBER: solvent accessible surface area

From: David A. Case <case.scripps.edu>
Date: Tue, 19 Apr 2005 07:43:24 -0700

On Tue, Apr 19, 2005, John wrote:

> I guess Molsurf calculates solvent excluding surface and not accessible
> surface.

This is correct. However, you can easily get molsurf to give you the solvent
accessible surface: Just at 1.4 to each of the atomic radii, and set the
solvent probe radius to zero.

.....good luck....dac

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Received on Tue Apr 19 2005 - 15:53:00 PDT
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