AMBER: capping

From: <amit.mbu.iisc.ernet.in>
Date: Wed, 27 Apr 2005 13:00:37 +0530 (IST)

Dear amber users,
 I am doing simulation of free amino acid as a ligand in protein. I would
like to cap the amino acid at N and C terminal. Even leap doesnt include
missing hydrogen atom at the N terminal.Give me some suggestion how to
perform capping in amber. I am a new amber user. Any suggestion is
appreciated.

Thanks.

amit



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Received on Wed Apr 27 2005 - 08:53:00 PDT
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