> trajin MDtraj1 1 1000 100
> reference my_reference_snap
> trajout aligned_traj
> rms my_reference_snap out rms .P
The correct usage is
rms reference out rms .P
which will use the most recently specified reference file (prior to the
rms command).
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Received on Fri Apr 01 2005 - 18:53:01 PST
