Dear Hannes
> I try to use LEAP to set up an oligopeptide with a dye labelled lysine
> within. I already set up prep and frcmod files for the dye using
> Antechamber, successfully. Using the dye's library for a
> sequential peptide,
> i.e. having the dye attached at the N terminus of the peptide
> works fine.
> (Using pep = sequence {DYE PRO LYS ...})
This tutorial deals with what you want to do.
http://www.rosswalker.co.uk/tutorials/amber_workshop/Tutorial_four/index.htm
You could also look at this one which shows how to use antechamber with
leap.
http://www.rosswalker.co.uk/tutorials/amber_workshop/Tutorial_five/index.htm
I hope this helps.
All the best
Ross
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|\oss Walker
| Department of Molecular Biology TPC15 |
| The Scripps Research Institute |
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Received on Tue Apr 12 2005 - 16:53:01 PDT
