Dear Hwankyu
> As far as I understand your suggestion, I can generate topologies of
> this molecule only manually. So, I can create some big residues
> (including a lot of DEN and COR) that I can make the biggest.
> And then,
> I can make those residues in xleap and then manually add
> bonds between
> those big residues by "bond" command in xleap, which will
> reduce manual
> work. Is it right?
Yes, that is exactly right. By dividing your system up into big chunks you
will be able to cut down on the number of manual bonds you have to add. I
would do this in stages though, start with a cut down version of your system
that you can easily visualise and check manually before moving onto the full
system.
All the best
Ross
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|\oss Walker
| Department of Molecular Biology TPC15 |
| The Scripps Research Institute |
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Received on Mon Apr 11 2005 - 18:53:00 PDT
