Dear AMBER community,
The crystal structure of a bulged RNA contains
crystallographic waters. To run implicit solvent
simulation of the molecule position restraints are
imposed on the water molecules. During the dynamics
the RNA molecule bends in the opposite direction and
the water molecules are get seperated from the RNA. Is
there any way to restrain the distance of the water
molecules from the atoms of the RNA?
Thanks in advance
===========================================================================
/\/\athew
Mathew K Varghese
Research Scholar
School of Pure and Applied Physics
M.G.University
Kottayam, Kerala
India
email mathew_kvarghese.yahoo.co.in
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Received on Thu Apr 28 2005 - 08:53:01 PDT
