Hi, Ye:
Is it done in AMBER8? I didnot find the translation of coordinates in AMBER7.
Anyway, it should make no difference. If it is true as you said, it
is difficult to
make sure if you get a corrected output pdb files compared with original
trajectory file.
Jack
On 4/25/05, Ye MEI <ymei.itcc.nju.edu.cn> wrote:
> Dear Amber users，
>
> I am trying to use mm_pbsa to analyze the results md simulations. But I notice that the coordinates of the complex in the intermediate pdb files are translation of real coordinates in md simulation. Why mm_pbsa need translate the coordinates?
>
>
> Ye MEI
> ymei.itcc.nju.edu.cn
> 2005-04-25
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Received on Mon Apr 25 2005 - 01:53:00 PDT
