Amber Archive Jun 2022 by subject
- [AMBER] [EXTERNAL] Calculation of RDF around a fixed position in space
- [AMBER] acetonitrile
- [AMBER] Amber
- [AMBER] Amber22 GCC8/CUDA10.2 compile issue
- [AMBER] Amber22 installation issues
- [AMBER] Antechamber error in creating FF for charged organic molecule
- [AMBER] Any help for TI calculation with pmemd.cuda
- [AMBER] cholorform solvent very high energy
- [AMBER] cpptraj autoimage
- [AMBER] cpptraj doesn't read c4 term of LJ 12-6-4 potential
- [AMBER] CPPTRAJ, Total H-Bond Count Question
- [AMBER] Extract trajectories REMD
- [AMBER] Force field interfaces
- [AMBER] GIST calculation on OpenMM trajectory
- [AMBER] hydrophobic interactions analysis
- [AMBER] In the QM/MM MD with g09, the Fe which in the QM region, is written as F (and the atomic number is written as 9) in gau_job.log and gau_job.Inp.
- [AMBER] Issues when running minimization with ParmEd under Amber20 installation
- [AMBER] KeyError:"M"(MCPB.py) for four Mn3+
- [AMBER] KeyError:"M"(MCPB.py) for more than one MN
- [AMBER] mdin files problem in REMD
- [AMBER] metatwist error
- [AMBER] no new update for ambertool 21 in ubuntu 22.04
- [AMBER] Nudged Elastic Band for a enzymatic reaction in explicit solvent
- [AMBER] ParmEd, Trouble with timerge
- [AMBER] PIP2 lipids in Amber FF
- [AMBER] Postdoc Position (immediately available)
- [AMBER] PPI-GaMD error in amber22
- [AMBER] RDF vs, Coordination numbers
- [AMBER] REMD trajectory visualisation help
- [AMBER] Reproducibility issues for Umbrella Sampling simulations using NFE for different AMBER versions
- [AMBER] Segmentation Fault During Minimization in Sander.MPI
- [AMBER] Should I Perform Docking Before Simulation To Find Realistic Binding Score With MMPBSA ?
- [AMBER] Simulating hot water in super-cold gas under 0 pressure
- [AMBER] Slightly misleading error message: "mcbarint is greater than the number of steps"
- [AMBER] Spurious protein distortion in Thermodynamic Integration
- [AMBER] tleap problem with spc water
- [AMBER] Twist and roll angles in base stack
- [AMBER] Visualizing rism3d.snglpnt output
- [AMBER] writing dna-ligand topology using amber t-leap
- [AMBER] {SPAM?} In the QM/MM MD with g09, the Fe which in the QM region, is written as F (and the atomic number is written as 9) in gau_job.log and gau_job.Inp.
- mdin files problem in REMD
- Last message date: Thu Aug 04 2022 - 13:33:56 PDT
- Archived on: Wed Dec 25 2024 - 05:56:11 PST