Hello Amber Users
Is there any updated tutorial for running REMD simulations? I am trying to
do REMD simulations for cyclic peptides using Amber20. I have followed the
tutorial at
http://ambermd.org/tutorials/advanced/tutorial7/
Somehow, I am unable to visualise the trajectory after following these
steps. The trajectory does not load in VMD. Any solution for it?
In case there is anyone who does REMD for cyclic peptides, can you please
help me understand and proceed with the steps?
Thanks
Suchetana Gupta
University of Oregon
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Received on Thu Aug 04 2022 - 13:33:21 PDT
