Amber Archive Feb 2006 by subject
- about compiling errors for Leap
- AMBER:
- AMBER: 2D-topology
- AMBER: A problem with Amber force field new parameter derivation
- AMBER: About WHAM
- AMBER: Absoft Pro Fortran and AMBER 8 on MacOS X 10.4.4
- AMBER: Acetyl CoA
- AMBER: AMBER 7 and cutoff's
- AMBER: amber 8 problem
- AMBER: AMBER force field with namd
- AMBER: Amber8 parallel compilation problems on an OSCAR Cluster
- AMBER: Amber8 parallel compilation problems on EM64T system
- AMBER: Angle restraint
- AMBER: antechamber for a database of organic molecules
- AMBER: Antechamber Package Announcement
- AMBER: Ask for your help to install Amber8 software
- AMBER: basic minimize question
- AMBER: bugfix for impropers in parmchk
- AMBER: Cannot successfully assign bond type for this molecule?
- AMBER: CARNAL: H-BOND Specifying side chains only
- AMBER: Charge of the phosphorylated Ser/Thr in MM_PBSA calculation
- AMBER: charge redistribution in .prep files
- AMBER: Charges on atoms in protein :AMBER
- AMBER: Compiling the parallel version of amber 8 in a beowulf linux cluster
- AMBER: Constant pressure - restart - Amber8
- AMBER: could amber calculte the binding free energy ofonly two small ligands (no big molecules) ?
- AMBER: desc related issue
- AMBER: dihedral parameters
- AMBER: Distortion in parallelploied
- AMBER: DNA tutorial xleap help
- AMBER: does anyone have library file for methylated histidine, 2003 ff?
- AMBER: double stranded polyribocytidylic acid
- AMBER: dynamic memory allocation problem in nmode
- AMBER: EAMBER
- AMBER: entropic energy
- AMBER: Error in RST files in long simulations!
- AMBER: Error when installing
- AMBER: failed to save prm and xyz using ff96
- AMBER: format of qusaiharmonic eigenvector file in AMBER7
- AMBER: Free energy perturbation
- AMBER: generating parameters for the NADH analogue H4NAD
- AMBER: Gibbs PMF Calculation
- AMBER: helix content during my simulation
- AMBER: Hessian matrix
- AMBER: How to develop charge for my deprotonated glycine
- AMBER: How to explain the meaning of the mmpbsa/DC result?
- AMBER: instructions for making a library file for an unusual residue?
- AMBER: Istallation AMBER8
- AMBER: lib file
- AMBER: lifetimes
- AMBER: m4 error with Amber8 on SUN
- AMBER: mask issues
- AMBER: MD job stopped without any error information?
- AMBER: MD of oligomer sequences
- AMBER: minization: outputing intermediate snapshots
- AMBER: MM-PBSA
- AMBER: mm_pbsa output
- AMBER: MM_PBSA problem (No values for MM_GAS )
- AMBER: mm_pbsa problem in IBM-aix
- AMBER: MMPBSA: magnitude of PB calculation
- AMBER: MPICH-1.2.7 compilation problem !
- AMBER: negative T_solv values
- AMBER: NMR restraints and LES
- AMBER: non bond list overflow
- AMBER: Organic molecules
- AMBER: paralelization and sander problems
- AMBER: Parallel error in Amber 8
- AMBER: parallel problem of amber8
- AMBER: Parallel version of Amber: error message
- AMBER: parameter loading problem
- AMBER: Phosphorylated amino acid
- AMBER: PMED in AMBER
- AMBER: PMEMD MPI_Finalize() error
- AMBER: positional restraints & constant pressure
- AMBER: prepi definitions
- AMBER: Problem in compiling sander with MMTSB
- AMBER: Problem in running umbrella sampling
- AMBER: Problem with file size of sander outputs
- AMBER: process_mdout.perl
- AMBER: protein ligand complex
- AMBER: ptraj atomicfluct: is it possible to calculate atomic fluctations from a reference structure
- AMBER: ptraj warning while loading reference
- AMBER: Question about renaming a residue
- AMBER: sander problem
- AMBER: sander testing problem
- AMBER: script advice
- AMBER: simulated annealing run--temp won't rise
- AMBER: soft-core potential in amber?
- AMBER: specifying RSOLV when calculating 2003 force field charges
- AMBER: Strange minimization output problem
- AMBER: Sulfonamides and GAFF
- AMBER: TI cal
- AMBER: Ti calculations in dmso solvent
- AMBER: Torsional restraints for groups of atoms
- AMBER: Truncated octahedral box as triclinic lattice vectors
- AMBER: Values of Spring Constants
- AMBER: What Viewer is best
- AMBER: Xleap crash
- Force Decomposition for MTS in AMBER 8.
- Last message date: Sun Mar 05 2006 - 06:10:12 PST
- Archived on: Wed Dec 25 2024 - 05:53:31 PST
