Amber Archive Feb 2006: by author

A D
- AMBER: script advice (Mon Feb 13 2006 - 18:35:35 PST)
- Re: AMBER: basic minimize question (Wed Feb 01 2006 - 15:35:38 PST)
- AMBER: basic minimize question (Wed Feb 01 2006 - 14:50:53 PST)
Aaron J. Greenwood
- Re: AMBER: Amber8 parallel compilation problems on an OSCAR Cluster (Fri Feb 03 2006 - 07:57:30 PST)
- AMBER: Amber8 parallel compilation problems on an OSCAR Cluster (Thu Feb 02 2006 - 14:18:59 PST)
Abd Ghani Abd Aziz
- Re: AMBER: failed to save prm and xyz using ff96 (Tue Feb 28 2006 - 23:49:57 PST)
- AMBER: failed to save prm and xyz using ff96 (Tue Feb 28 2006 - 07:32:49 PST)
- RE: AMBER: amber 8 problem (Mon Feb 20 2006 - 20:55:27 PST)
- Re: AMBER: amber 8 problem (Mon Feb 20 2006 - 08:17:37 PST)
- AMBER: amber 8 problem (Mon Feb 20 2006 - 07:08:12 PST)
Adrian Roitberg
- Re: AMBER: Charges on atoms in protein :AMBER (Thu Feb 02 2006 - 11:50:54 PST)
- Re: AMBER: Values of Spring Constants (Wed Feb 01 2006 - 05:05:14 PST)
Amanda Jonsson
- AMBER: DNA tutorial xleap help (Wed Feb 08 2006 - 10:56:32 PST)
Amber admin
- AMBER: m4 error with Amber8 on SUN (Wed Feb 15 2006 - 14:51:38 PST)
Ananda Rama Krishnan Selvaraj
- Re: AMBER: Strange minimization output problem (Sat Feb 04 2006 - 08:12:19 PST)
Andreas Svrcek-Seiler
- Re: AMBER: amber 8 problem (Mon Feb 20 2006 - 08:20:28 PST)
- Re: AMBER: Strange minimization output problem (Sun Feb 05 2006 - 07:23:03 PST)
andy ng
- Re: AMBER: Phosphorylated amino acid (Mon Feb 20 2006 - 21:55:55 PST)
- AMBER: Phosphorylated amino acid (Sun Feb 19 2006 - 15:51:41 PST)
- AMBER: Strange minimization output problem (Sat Feb 04 2006 - 04:39:31 PST)
Angelo Pugliese
- AMBER: Free energy perturbation (Wed Feb 22 2006 - 08:42:06 PST)
- Re: AMBER: Distortion in parallelploied (Mon Feb 13 2006 - 07:40:40 PST)
Atilio I Anzellotti/O/VCU
- AMBER: MD of oligomer sequences (Thu Feb 02 2006 - 14:53:28 PST)
Atsutoshi Okabe
- AMBER: About WHAM (Mon Feb 20 2006 - 22:22:01 PST)
- AMBER: Gibbs PMF Calculation (Fri Feb 03 2006 - 00:38:55 PST)
- AMBER: Gibbs PMF Calculation (Wed Feb 01 2006 - 04:31:12 PST)
bala
- AMBER: sander problem (Thu Feb 16 2006 - 07:57:43 PST)
Baldoni Hector Armando
- AMBER: 2D-topology (Mon Feb 13 2006 - 13:50:11 PST)
Bill Ross
- Re: AMBER: CARNAL: H-BOND Specifying side chains only (Tue Feb 21 2006 - 13:41:25 PST)
- Re: AMBER: double stranded polyribocytidylic acid (Thu Feb 16 2006 - 10:53:10 PST)
- Re: AMBER: double stranded polyribocytidylic acid (Thu Feb 16 2006 - 10:49:20 PST)
- Re: AMBER: double stranded polyribocytidylic acid (Wed Feb 15 2006 - 09:25:21 PST)
- Re: AMBER: double stranded polyribocytidylic acid (Tue Feb 14 2006 - 12:35:19 PST)
- Re: AMBER: DNA tutorial xleap help (Wed Feb 08 2006 - 11:56:25 PST)
- RE: AMBER: Charges on atoms in protein :AMBER (Thu Feb 02 2006 - 11:31:28 PST)
- RE: AMBER: Charges on atoms in protein :AMBER (Thu Feb 02 2006 - 10:43:23 PST)
Bing Liu
- AMBER: MM_PBSA problem (No values for MM_GAS ) (Mon Feb 13 2006 - 06:40:47 PST)
Brian Stupi
- AMBER: process_mdout.perl (Thu Feb 16 2006 - 14:02:06 PST)
- RE: AMBER: sander problem (Thu Feb 16 2006 - 12:44:11 PST)
- Re: AMBER: Error when installing (Mon Feb 13 2006 - 12:40:46 PST)
- AMBER: Error when installing (Mon Feb 13 2006 - 12:19:19 PST)
- AMBER: What Viewer is best (Sat Feb 04 2006 - 21:59:29 PST)
Cao Tran
- RE: AMBER: Ask for your help to install Amber8 software (Fri Feb 10 2006 - 01:01:38 PST)
- AMBER: Ask for your help to install Amber8 software (Wed Feb 08 2006 - 05:53:11 PST)
CaoTran
- RE: AMBER: Ask for your help to install Amber8 software (Wed Feb 08 2006 - 07:03:51 PST)
Carlos Silva Lopez
- Re: AMBER: Compiling the parallel version of amber 8 in a beowulf linux cluster (Tue Feb 28 2006 - 14:27:07 PST)
- AMBER: Compiling the parallel version of amber 8 in a beowulf linux cluster (Tue Feb 28 2006 - 09:30:42 PST)
Carlos Simmerling
- Re: AMBER: failed to save prm and xyz using ff96 (Tue Feb 28 2006 - 09:24:23 PST)
- Re: AMBER: AMBER force field with namd (Thu Feb 23 2006 - 05:41:31 PST)
- Re: AMBER: paralelization and sander problems (Tue Feb 21 2006 - 04:57:10 PST)
- Re: AMBER: Error in RST files in long simulations! (Tue Feb 21 2006 - 05:02:58 PST)
- Re: AMBER: Error in RST files in long simulations! (Mon Feb 20 2006 - 12:32:13 PST)
- Re: AMBER: paralelization and sander problems (Fri Feb 17 2006 - 03:59:44 PST)
- Re: AMBER: sander problem (Thu Feb 16 2006 - 08:25:20 PST)
- Re: AMBER: paralelization and sander problems (Tue Feb 14 2006 - 05:59:43 PST)
- Re: AMBER: EAMBER (Thu Feb 09 2006 - 20:15:21 PST)
- Re: AMBER: Parallel version of Amber: error message (Mon Feb 06 2006 - 11:21:31 PST)
- Re: AMBER: dihedral parameters (Mon Feb 06 2006 - 04:22:03 PST)
- Re: AMBER: dihedral parameters (Sat Feb 04 2006 - 09:30:27 PST)
- Re: AMBER: AMBER 7 and cutoff's (Fri Feb 03 2006 - 11:20:30 PST)
- Re: AMBER: Gibbs PMF Calculation (Fri Feb 03 2006 - 03:52:56 PST)
- Re: AMBER: Values of Spring Constants (Thu Feb 02 2006 - 03:34:30 PST)
- Re: AMBER: protein ligand complex (Wed Feb 01 2006 - 10:26:10 PST)
- Re: AMBER: protein ligand complex (Wed Feb 01 2006 - 09:53:06 PST)
- Re: AMBER: Gibbs PMF Calculation (Wed Feb 01 2006 - 04:54:33 PST)
- Re: AMBER: Values of Spring Constants (Wed Feb 01 2006 - 04:52:50 PST)
Cenk Andac
- Re: AMBER: dynamic memory allocation problem in nmode (Sun Feb 26 2006 - 01:26:23 PST)
- AMBER: dynamic memory allocation problem in nmode (Sun Feb 26 2006 - 00:58:14 PST)
- RE: AMBER: Problem with file size of sander outputs (Wed Feb 22 2006 - 23:23:02 PST)
- AMBER: Problem with file size of sander outputs (Tue Feb 21 2006 - 23:54:24 PST)
- RE: AMBER: Ask for your help to install Amber8 software (Fri Feb 10 2006 - 02:46:12 PST)
- Re: AMBER: Ask for your help to install Amber8 software (Wed Feb 08 2006 - 06:44:30 PST)
Chris Moth
- Re: AMBER: format of qusaiharmonic eigenvector file in AMBER7 (Tue Feb 07 2006 - 06:10:07 PST)
Claire Zerafa
- AMBER: mask issues (Tue Feb 28 2006 - 04:46:12 PST)
cristian obiol
- Re: AMBER: paralelization and sander problems (Mon Feb 20 2006 - 04:13:58 PST)
- Re: AMBER: paralelization and sander problems (Fri Feb 17 2006 - 02:07:37 PST)
- AMBER: paralelization and sander problems (Tue Feb 14 2006 - 02:24:18 PST)
David A. Case
- Re: AMBER: Angle restraint (Tue Feb 28 2006 - 15:54:40 PST)
- Re: AMBER: ptraj warning while loading reference (Mon Feb 27 2006 - 08:44:52 PST)
- Re: AMBER: dynamic memory allocation problem in nmode (Sun Feb 26 2006 - 20:21:02 PST)
- Re: AMBER: Constant pressure - restart - Amber8 (Fri Feb 24 2006 - 13:18:58 PST)
- Re: AMBER: Constant pressure - restart - Amber8 (Fri Feb 24 2006 - 09:34:46 PST)
- Re: AMBER: entropic energy (Fri Feb 24 2006 - 08:36:49 PST)
- Re: AMBER: Ti calculations in dmso solvent (Thu Feb 23 2006 - 10:01:26 PST)
- Re: AMBER: NMR restraints and LES (Mon Feb 20 2006 - 18:26:17 PST)
- Re: AMBER: amber 8 problem (Mon Feb 20 2006 - 08:33:01 PST)
- Re: AMBER: charge redistribution in .prep files (Mon Feb 20 2006 - 08:29:41 PST)
- Re: AMBER: m4 error with Amber8 on SUN (Wed Feb 15 2006 - 15:56:06 PST)
- Re: AMBER: negative T_solv values (Wed Feb 15 2006 - 08:18:25 PST)
- Re: AMBER: Istallation AMBER8 (Tue Feb 14 2006 - 22:57:13 PST)
- Re: AMBER: Absoft Pro Fortran and AMBER 8 on MacOS X 10.4.4 (Tue Feb 14 2006 - 22:12:42 PST)
- Re: AMBER: 2D-topology (Tue Feb 14 2006 - 13:57:45 PST)
- Re: AMBER: Xleap crash (Tue Feb 14 2006 - 11:51:53 PST)
- Re: AMBER: Xleap crash (Tue Feb 14 2006 - 09:36:21 PST)
- Re: AMBER: paralelization and sander problems (Tue Feb 14 2006 - 08:32:59 PST)
- Re: AMBER: Problem in running umbrella sampling (Sun Feb 12 2006 - 21:11:48 PST)
- Re: AMBER: Distortion in parallelploied (Fri Feb 10 2006 - 09:04:13 PST)
- Re: AMBER: non bond list overflow (Tue Feb 07 2006 - 11:00:54 PST)
- Re: AMBER: Hessian matrix (Tue Feb 07 2006 - 08:40:37 PST)
- Re: AMBER: non bond list overflow (Mon Feb 06 2006 - 22:37:59 PST)
- Re: AMBER: Parallel error in Amber 8 (Mon Feb 06 2006 - 15:37:56 PST)
- Re: AMBER: Strange minimization output problem (Sat Feb 04 2006 - 12:20:17 PST)
- Re: AMBER: bugfix for impropers in parmchk (Sat Feb 04 2006 - 10:50:15 PST)
- Re: AMBER: Problem in compiling sander with MMTSB (Fri Feb 03 2006 - 16:31:32 PST)
- Re: AMBER: Values of Spring Constants (Fri Feb 03 2006 - 15:51:22 PST)
- Re: AMBER: (Fri Feb 03 2006 - 15:46:28 PST)
- Re: AMBER: positional restraints & constant pressure (Fri Feb 03 2006 - 08:40:53 PST)
- Re: AMBER: MD of oligomer sequences (Thu Feb 02 2006 - 18:08:42 PST)
- Re: AMBER: Amber8 parallel compilation problems on an OSCAR Cluster (Thu Feb 02 2006 - 17:49:39 PST)
- Re: AMBER: Amber8 parallel compilation problems on EM64T system (Thu Feb 02 2006 - 12:28:27 PST)
- Re: AMBER: MM-PBSA (Thu Feb 02 2006 - 11:00:23 PST)
- Re: AMBER: basic minimize question (Wed Feb 01 2006 - 16:09:11 PST)
- Re: AMBER: Problem in compiling sander with MMTSB (Wed Feb 01 2006 - 16:05:58 PST)
- Re: AMBER: Values of Spring Constants (Wed Feb 01 2006 - 08:38:13 PST)
- Re: AMBER: lifetimes (Wed Feb 01 2006 - 08:20:56 PST)
David Case
- Re: AMBER: simulated annealing run--temp won't rise (Thu Feb 02 2006 - 22:46:00 PST)
- AMBER: Re: Force Decomposition for MTS in AMBER 8. (Thu Feb 02 2006 - 22:34:23 PST)
- Re: AMBER: Cannot successfully assign bond type for this molecule? (Wed Feb 01 2006 - 13:49:55 PST)
David LeBard
- Re: AMBER: Parallel version of Amber: error message (Mon Feb 06 2006 - 12:10:29 PST)
David Mobley
- Re: AMBER: Ti calculations in dmso solvent (Thu Feb 23 2006 - 12:06:43 PST)
- Re: AMBER: Ti calculations in dmso solvent (Thu Feb 23 2006 - 08:58:17 PST)
- Re: AMBER: soft-core potential in amber? (Tue Feb 07 2006 - 06:54:33 PST)
- Re: AMBER: (Sat Feb 04 2006 - 10:06:23 PST)
Dr.Rudolf Friedemann
- AMBER: Istallation AMBER8 (Tue Feb 14 2006 - 02:41:39 PST)
Fabien Cailliez
- AMBER: AMBER force field with namd (Wed Feb 22 2006 - 09:54:23 PST)
Feng X Zhou
- RE: AMBER: Problem with file size of sander outputs (Thu Feb 23 2006 - 09:42:22 PST)
FyD
- Re: AMBER: A problem with Amber force field new parameter derivation (Thu Feb 23 2006 - 22:27:31 PST)
- Re: AMBER: instructions for making a library file for an unusual residue? (Tue Feb 21 2006 - 05:17:48 PST)
- Re: AMBER: instructions for making a library file for an unusual residue? (Sun Feb 19 2006 - 09:14:10 PST)
- Re: AMBER: antechamber for a database of organic molecules (Sun Feb 19 2006 - 07:51:52 PST)
german
- Re: AMBER: Problem with file size of sander outputs (Wed Feb 22 2006 - 02:49:49 PST)
- Re: AMBER: Charge of the phosphorylated Ser/Thr in MM_PBSA calculation (Thu Feb 16 2006 - 04:04:39 PST)
Guanglei Cui
- Re: AMBER: MD job stopped without any error information? (Mon Feb 27 2006 - 07:55:47 PST)
HL Eastwood
- AMBER: Amber8 parallel compilation problems on EM64T system (Thu Feb 02 2006 - 11:32:32 PST)
Ilyas Yildirim
- Re: AMBER: instructions for making a library file for an unusual residue? (Mon Feb 20 2006 - 22:28:49 PST)
- Re: AMBER: Question about renaming a residue (Fri Feb 17 2006 - 18:05:37 PST)
- Re: AMBER: lib file (Fri Feb 03 2006 - 17:11:36 PST)
- Re: AMBER: lib file (Thu Feb 02 2006 - 12:18:28 PST)
- RE: AMBER: Charges on atoms in protein :AMBER (Thu Feb 02 2006 - 12:14:53 PST)
- Re: AMBER: lib file (Thu Feb 02 2006 - 11:08:12 PST)
ivan.mmb.pcb.ub.es
- Re: AMBER: prepi definitions (Wed Feb 01 2006 - 08:33:42 PST)
Jennie Thomas
- Re: AMBER: Constant pressure - restart - Amber8 (Sun Feb 26 2006 - 17:56:59 PST)
- Re: AMBER: Constant pressure - restart - Amber8 (Fri Feb 24 2006 - 12:18:56 PST)
- AMBER: Constant pressure - restart - Amber8 (Fri Feb 24 2006 - 08:59:34 PST)
Jianzhong Liu
- AMBER: How to develop charge for my deprotonated glycine (Tue Feb 28 2006 - 11:58:31 PST)
Jingyuan Luke
- AMBER: Absoft Pro Fortran and AMBER 8 on MacOS X 10.4.4 (Tue Feb 14 2006 - 17:35:37 PST)
Jiri Sponer
- Re: AMBER: double stranded polyribocytidylic acid (Wed Feb 15 2006 - 09:46:27 PST)
- Re: AMBER: double stranded polyribocytidylic acid (Wed Feb 15 2006 - 05:16:46 PST)
- Re: AMBER: double stranded polyribocytidylic acid (Tue Feb 14 2006 - 04:56:07 PST)
- Re: AMBER: double stranded polyribocytidylic acid (Tue Feb 14 2006 - 02:54:05 PST)
Jiten
- Re: AMBER: dynamic memory allocation problem in nmode (Sun Feb 26 2006 - 07:07:23 PST)
- AMBER: mm_pbsa problem in IBM-aix (Fri Feb 17 2006 - 23:36:52 PST)
julien
- Re: AMBER: helix content during my simulation (Mon Feb 06 2006 - 07:04:51 PST)
- AMBER: helix content during my simulation (Mon Feb 06 2006 - 05:09:38 PST)
JunJun Liu
- Re: AMBER: Problem with file size of sander outputs (Wed Feb 22 2006 - 12:58:00 PST)
- Re: AMBER: amber 8 problem (Mon Feb 20 2006 - 08:05:53 PST)
- Re: AMBER: sander problem (Thu Feb 16 2006 - 08:16:34 PST)
- Re: AMBER: script advice (Wed Feb 15 2006 - 07:35:44 PST)
Junmei Wang
- AMBER: Antechamber Package Announcement (Fri Feb 24 2006 - 08:26:52 PST)
- RE: AMBER: antechamber for a database of organic molecules (Sun Feb 19 2006 - 19:32:22 PST)
Kara Di Giorgio
- AMBER: Question about renaming a residue (Fri Feb 17 2006 - 15:28:26 PST)
Kateryna Miroshnychenko
- Re: AMBER: double stranded polyribocytidylic acid (Thu Feb 16 2006 - 02:41:52 PST)
- Re: AMBER: double stranded polyribocytidylic acid (Tue Feb 14 2006 - 04:09:36 PST)
- AMBER: double stranded polyribocytidylic acid (Tue Feb 14 2006 - 01:44:01 PST)
- Re: AMBER: bugfix for impropers in parmchk (Mon Feb 06 2006 - 07:09:06 PST)
- AMBER: positional restraints & constant pressure (Thu Feb 02 2006 - 07:40:30 PST)
Kay Kunes
- AMBER: CARNAL: H-BOND Specifying side chains only (Tue Feb 21 2006 - 12:47:14 PST)
Kenley Barrett
- AMBER: specifying RSOLV when calculating 2003 force field charges (Fri Feb 24 2006 - 12:50:07 PST)
- AMBER: does anyone have library file for methylated histidine, 2003 ff? (Tue Feb 21 2006 - 08:27:13 PST)
- Re: AMBER: instructions for making a library file for an unusual residue? (Mon Feb 20 2006 - 16:22:22 PST)
- AMBER: instructions for making a library file for an unusual residue? (Sat Feb 18 2006 - 14:02:42 PST)
- Re: AMBER: non bond list overflow (Tue Feb 07 2006 - 08:32:18 PST)
- AMBER: non bond list overflow (Mon Feb 06 2006 - 19:43:06 PST)
- AMBER: simulated annealing run--temp won't rise (Thu Feb 02 2006 - 19:26:52 PST)
Lei Wang
- RE: AMBER: Ask for your help to install Amber8 software (Wed Feb 08 2006 - 07:16:32 PST)
Lihua Wang
- Re: AMBER: Parallel version of Amber: error message (Mon Feb 06 2006 - 12:27:40 PST)
- AMBER: parameter loading problem (Thu Feb 02 2006 - 13:01:51 PST)
linfu
- AMBER: parallel problem of amber8 (Mon Feb 20 2006 - 05:01:02 PST)
- AMBER: could amber calculte the binding free energy ofonly two small ligands (no big molecules) ? (Sun Feb 05 2006 - 08:49:32 PST)
lucas luquitas
- Re: AMBER: Error in RST files in long simulations! (Mon Feb 20 2006 - 15:08:38 PST)
- AMBER: Error in RST files in long simulations! (Mon Feb 20 2006 - 11:59:35 PST)
- AMBER: mm_pbsa output (Mon Feb 13 2006 - 15:40:28 PST)
luckyang.gmail.com
- Re: AMBER: Problem in compiling sander with MMTSB (Fri Feb 03 2006 - 17:21:51 PST)
- Re: AMBER: Problem in compiling sander with MMTSB (Wed Feb 01 2006 - 19:26:55 PST)
- Re: AMBER: Problem in compiling sander with MMTSB (Wed Feb 01 2006 - 11:39:04 PST)
Lydia
- AMBER: soft-core potential in amber? (Mon Feb 06 2006 - 16:13:14 PST)
Magne Olufsen
- AMBER: ptraj atomicfluct: is it possible to calculate atomic fluctations from a reference structure (Sun Feb 26 2006 - 11:00:23 PST)
Marie Brut
- AMBER: Organic molecules (Tue Feb 14 2006 - 08:42:23 PST)
- AMBER: Hessian matrix (Mon Feb 06 2006 - 04:12:53 PST)
Mark Williamson
- Re: AMBER: Parallel version of Amber: error message (Mon Feb 06 2006 - 13:00:09 PST)
Markus O Kaukonen
- AMBER: Truncated octahedral box as triclinic lattice vectors (Mon Feb 20 2006 - 06:42:45 PST)
- AMBER: negative T_solv values (Wed Feb 15 2006 - 00:25:40 PST)
mbrut.laas.fr
- Re: AMBER: Hessian matrix (Tue Feb 07 2006 - 09:55:17 PST)
mdione.fcq.unc.edu.ar
- AMBER: sander testing problem (Mon Feb 27 2006 - 13:53:23 PST)
Melinda Layten
- Re: AMBER: MD job stopped without any error information? (Mon Feb 27 2006 - 07:18:09 PST)
Michael Mazanetz
- AMBER: prepi definitions (Wed Feb 01 2006 - 07:56:25 PST)
Mingfeng Yang
- Re: AMBER: PMEMD MPI_Finalize() error (Fri Feb 10 2006 - 08:07:53 PST)
- AMBER: PMEMD MPI_Finalize() error (Fri Feb 10 2006 - 06:50:59 PST)
- AMBER: EAMBER (Thu Feb 09 2006 - 19:56:04 PST)
- Re: AMBER: Parallel version of Amber: error message (Mon Feb 06 2006 - 12:29:38 PST)
- Re: AMBER: helix content during my simulation (Mon Feb 06 2006 - 07:39:59 PST)
- Re: AMBER: helix content during my simulation (Mon Feb 06 2006 - 06:03:32 PST)
Natasja Brooijmans
- Re: AMBER: MMPBSA: magnitude of PB calculation (Mon Feb 06 2006 - 04:52:36 PST)
Nina Fischer
- AMBER: entropic energy (Fri Feb 24 2006 - 04:15:17 PST)
Paweł Gruszczyński
- AMBER: (Sat Feb 04 2006 - 01:16:10 PST)
Phineus Markwick
- AMBER: format of qusaiharmonic eigenvector file in AMBER7 (Tue Feb 07 2006 - 03:10:44 PST)
Pradipta Bandyopadhyay
- AMBER: MPICH-1.2.7 compilation problem ! (Fri Feb 03 2006 - 05:49:31 PST)
Ray Luo
- Re: AMBER: mm_pbsa problem in IBM-aix (Sun Feb 19 2006 - 12:22:01 PST)
- Re: AMBER: MMPBSA: magnitude of PB calculation (Thu Feb 02 2006 - 23:49:07 PST)
Rhoad, Jonathan S.
- AMBER: (Fri Feb 03 2006 - 11:56:37 PST)
richard dimelow
- Re: AMBER: dihedral parameters (Mon Feb 06 2006 - 02:22:08 PST)
- AMBER: dihedral parameters (Sat Feb 04 2006 - 08:06:41 PST)
Robert Duke
- Re: AMBER: PMEMD MPI_Finalize() error (Fri Feb 10 2006 - 07:15:29 PST)
Ross Walker
- RE: AMBER: failed to save prm and xyz using ff96 (Tue Feb 28 2006 - 08:31:41 PST)
- RE: AMBER: MD job stopped without any error information? (Mon Feb 27 2006 - 08:22:25 PST)
- AMBER: RE: about compiling errors for Leap (Mon Feb 27 2006 - 08:17:27 PST)
- RE: AMBER: TI cal (Thu Feb 23 2006 - 11:25:57 PST)
- RE: AMBER: generating parameters for the NADH analogue H4NAD (Thu Feb 23 2006 - 11:00:30 PST)
- RE: AMBER: Problem with file size of sander outputs (Thu Feb 23 2006 - 10:06:30 PST)
- RE: AMBER: Problem with file size of sander outputs (Wed Feb 22 2006 - 13:16:30 PST)
- RE: AMBER: amber 8 problem (Mon Feb 20 2006 - 09:05:57 PST)
- RE: AMBER: parallel problem of amber8 (Mon Feb 20 2006 - 09:00:26 PST)
- RE: AMBER: sander problem (Thu Feb 16 2006 - 13:20:45 PST)
- RE: AMBER: sander problem (Thu Feb 16 2006 - 08:51:24 PST)
- RE: AMBER: minization: outputing intermediate snapshots (Tue Feb 14 2006 - 10:34:30 PST)
- RE: AMBER: Error when installing (Tue Feb 14 2006 - 10:30:29 PST)
- RE: AMBER: paralelization and sander problems (Tue Feb 14 2006 - 09:48:06 PST)
- RE: AMBER: Organic molecules (Tue Feb 14 2006 - 09:44:25 PST)
- RE: AMBER: Charges on atoms in protein :AMBER (Wed Feb 01 2006 - 20:17:24 PST)
- RE: AMBER: basic minimize question (Wed Feb 01 2006 - 16:17:57 PST)
- RE: AMBER: basic minimize question (Wed Feb 01 2006 - 15:06:07 PST)
Sai Kumar Ramadugu
- Re: AMBER: Problem in running umbrella sampling (Sun Feb 12 2006 - 21:22:49 PST)
- AMBER: Problem in running umbrella sampling (Sun Feb 12 2006 - 20:28:09 PST)
- Re: AMBER: Values of Spring Constants (Thu Feb 02 2006 - 20:01:44 PST)
- Re: AMBER: Values of Spring Constants (Wed Feb 01 2006 - 21:00:56 PST)
- Re: AMBER: Values of Spring Constants (Wed Feb 01 2006 - 07:43:05 PST)
- AMBER: Values of Spring Constants (Tue Jan 31 2006 - 23:18:44 PST)
Satyan Sharma
- AMBER: Acetyl CoA (Thu Feb 09 2006 - 09:55:19 PST)
Scott Pendley
- Re: AMBER: Xleap crash (Tue Feb 14 2006 - 10:08:59 PST)
- Re: AMBER: Xleap crash (Tue Feb 14 2006 - 09:53:37 PST)
- AMBER: Xleap crash (Tue Feb 14 2006 - 08:55:12 PST)
- Re: AMBER: (Mon Feb 13 2006 - 13:00:15 PST)
- Re: AMBER: MM_PBSA problem (No values for MM_GAS ) (Mon Feb 13 2006 - 12:57:27 PST)
shuli kang
- Re: AMBER: Problem with file size of sander outputs (Wed Feb 22 2006 - 00:45:21 PST)
- AMBER: (Mon Feb 13 2006 - 04:26:07 PST)
Simon Whitehead
- AMBER: generating parameters for the NADH analogue H4NAD (Thu Feb 23 2006 - 10:31:02 PST)
sishi.tang.utoronto.ca
- Re: AMBER: MMPBSA: magnitude of PB calculation (Sat Feb 04 2006 - 08:47:21 PST)
- AMBER: MMPBSA: magnitude of PB calculation (Fri Feb 03 2006 - 15:34:10 PST)
Sivakolundu, Sivashankar
- AMBER: NMR restraints and LES (Mon Feb 20 2006 - 17:43:38 PST)
snoze pa
- Re: AMBER: sander problem (Thu Feb 16 2006 - 08:13:22 PST)
- AMBER: PMED in AMBER (Wed Feb 08 2006 - 17:07:40 PST)
- AMBER: desc related issue (Wed Feb 08 2006 - 11:15:19 PST)
- Re: AMBER: Parallel error in Amber 8 (Mon Feb 06 2006 - 16:16:20 PST)
- Re: AMBER: Parallel error in Amber 8 (Mon Feb 06 2006 - 15:18:16 PST)
- Re: AMBER: Parallel error in Amber 8 (Mon Feb 06 2006 - 15:02:22 PST)
- AMBER: Parallel error in Amber 8 (Mon Feb 06 2006 - 14:47:19 PST)
- Re: AMBER: Parallel version of Amber: error message (Mon Feb 06 2006 - 11:45:48 PST)
- AMBER: Parallel version of Amber: error message (Mon Feb 06 2006 - 10:55:39 PST)
- Re: AMBER: lib file (Fri Feb 03 2006 - 11:32:39 PST)
- AMBER: lib file (Thu Feb 02 2006 - 08:55:33 PST)
- Re: AMBER: Cannot successfully assign bond type for this molecule? (Wed Feb 01 2006 - 15:00:40 PST)
- AMBER: Cannot successfully assign bond type for this molecule? (Wed Feb 01 2006 - 12:43:53 PST)
- Re: AMBER: protein ligand complex (Wed Feb 01 2006 - 11:42:11 PST)
- Re: AMBER: protein ligand complex (Wed Feb 01 2006 - 10:06:39 PST)
- AMBER: protein ligand complex (Wed Feb 01 2006 - 09:21:21 PST)
Stefano Federico Massimiliano Pieraccini (Stefano.Pieraccini)
- AMBER: charge redistribution in .prep files (Mon Feb 20 2006 - 04:37:54 PST)
Steve Seibold
- RE: AMBER: TI cal (Thu Feb 23 2006 - 12:08:20 PST)
- AMBER: TI cal (Thu Feb 23 2006 - 11:02:45 PST)
Supat Jiranusornkul
- AMBER: Torsional restraints for groups of atoms (Fri Feb 17 2006 - 04:14:12 PST)
Thomas E. Cheatham, III
- Re: AMBER: Question about renaming a residue (Fri Feb 17 2006 - 15:46:27 PST)
- RE: AMBER: sander problem (Thu Feb 16 2006 - 13:12:39 PST)
Thomas Steinbrecher
- Re: AMBER: MMPBSA: magnitude of PB calculation (Mon Feb 06 2006 - 00:54:01 PST)
Tim Meyer
- Re: AMBER: Phosphorylated amino acid (Mon Feb 20 2006 - 00:56:36 PST)
Toomas Kaevand
- AMBER: AMBER 7 and cutoff's (Fri Feb 03 2006 - 09:58:53 PST)
Varsha Goyal
- AMBER: Sulfonamides and GAFF (Sun Feb 26 2006 - 17:16:18 PST)
- AMBER: Distortion in parallelploied (Thu Feb 09 2006 - 17:39:06 PST)
- RE: AMBER: Charges on atoms in protein :AMBER (Thu Feb 02 2006 - 11:20:59 PST)
- AMBER: Charges on atoms in protein :AMBER (Wed Feb 01 2006 - 19:00:09 PST)
venditti2.unisi.it
- AMBER: Angle restraint (Tue Feb 28 2006 - 12:00:48 PST)
Vidana.Epa.csiro.au
- AMBER: A problem with Amber force field new parameter derivation (Thu Feb 23 2006 - 22:16:04 PST)
Vitor Manuel Sousa F?x
- AMBER: Ti calculations in dmso solvent (Mon Feb 20 2006 - 09:55:32 PST)
Vlad Cojocaru
- Re: AMBER: mask issues (Tue Feb 28 2006 - 05:03:16 PST)
- Re: AMBER: ptraj warning while loading reference (Mon Feb 27 2006 - 09:00:43 PST)
- AMBER: ptraj warning while loading reference (Mon Feb 27 2006 - 04:45:28 PST)
- Re: AMBER: generating parameters for the NADH analogue H4NAD (Thu Feb 23 2006 - 10:53:30 PST)
- Re: AMBER: AMBER force field with namd (Thu Feb 23 2006 - 06:04:51 PST)
- Re: AMBER: AMBER force field with namd (Thu Feb 23 2006 - 02:11:17 PST)
- AMBER: minization: outputing intermediate snapshots (Fri Feb 10 2006 - 07:05:59 PST)
- AMBER: minization: outputing intermediate snapshots (Fri Feb 10 2006 - 03:49:04 PST)
- Re: AMBER: What Viewer is best (Sun Feb 05 2006 - 09:01:11 PST)
Wei Zhang
- Re: AMBER: Compiling the parallel version of amber 8 in a beowulf linux cluster (Tue Feb 28 2006 - 10:01:34 PST)
- Re: AMBER: DNA tutorial xleap help (Wed Feb 08 2006 - 11:42:32 PST)
- Re: AMBER: Parallel error in Amber 8 (Mon Feb 06 2006 - 15:06:07 PST)
ying xiong
- AMBER: MD job stopped without any error information? (Mon Feb 27 2006 - 00:29:50 PST)
Yogesh Sabnis
- AMBER: antechamber for a database of organic molecules (Sun Feb 19 2006 - 07:16:23 PST)
zgleo
- AMBER: Charge of the phosphorylated Ser/Thr in MM_PBSA calculation (Wed Feb 15 2006 - 22:04:47 PST)
zhli_2000.126.com
- AMBER: How to explain the meaning of the mmpbsa/DC result? (Sat Feb 25 2006 - 23:01:04 PST)

Amber Archive Feb 2006 by author