RE: AMBER: amber 8 problem

From: Abd Ghani Abd Aziz <ghaniee.yahoo.com>
Date: Mon, 20 Feb 2006 20:55:27 -0800 (PST)

thanks to all for the helps...

--- Ross Walker <ross.rosswalker.co.uk> wrote:

> > /usr/local/amber8/exe/sander: error while loading
> > shared libraries: libcxa.so.5: cannot open shared
> > object file: No such file or directory
> >
> > i knew there is something to do with the ifort
> > compiler but i don't know how to solve it.
>
> You need to add the following to the users .cshrc or
> .bashrc file:
>
> CSH
> ---
> source /opt/intel_cc_80/bin/iccvars.csh
> source /opt/intel_fc_80/bin/ifortvars.csh (or
> similar path)
>
> BASH
> ----
> source /opt/intel_cc_80/bin/iccvars.sh
> source /opt/intel_fc_80/bin/ifortvars.sh (or
> similar path)
>
> This will setup the correct LD_LIBRARY_PATH and PATH
> environment variables
> for you.
>
> You can also compile amber statically (./configure
> ... -static ...) and
> avoid this problem. Although for parallel you also
> need to compile the mpi
> installation statically.
>
> All the best
> Ross
>
> /\
> \/
> |\oss Walker
>
> | Department of Molecular Biology TPC15 |
> | The Scripps Research Institute |
> | Tel: +1 858 784 8889 | EMail:-
> ross.rosswalker.co.uk |
> | http://www.rosswalker.co.uk | PGP Key available on
> request |
>
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>
>
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Received on Sun Feb 26 2006 - 06:10:10 PST
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