> I can see the ions were added in a straight line along
> the bottom, perpendicular to the DNA helix. This also messes up the next
> solvation step.
If you solvate first, then addIons, you will may get a
better result.
> It is a machine-dependent bug,
Not entirely - there are a few known bugs in addIons, and the
extreme sort of case you are seeing is apparently a machine-
dependant manifestation.
Bill
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Received on Sun Feb 12 2006 - 06:10:05 PST
