Re: AMBER: double stranded polyribocytidylic acid

From: Bill Ross <>
Date: Thu, 16 Feb 2006 10:49:20 -0800 (PST)

> > Alternative way is to take the i-tetraplex, to remove
> > one of its self-intercalated duplexes, and let the rest
> > relaxe as duplex via MD.
> I've done such two test 100ps simulations with implisit solvent
> starting from the modified 190d.pdb with and without weak positional

I would be hesitant to use implicit water when dealing with
speculative models. Perhaps others could comment..

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Received on Sun Feb 19 2006 - 06:10:18 PST
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