I am attempting to comile AMBER8 on a Intel Xeon 64-bit system (EM64T) running SuSE Linux Enterprise Srever 9 (SLES9). I have the intel compilers icc v. 9.0 and ifort v. 9.0. I run the configure script to get the config.h (attached). When it attempts to link sander it gives the error below. Any help would be appreciated.
Thanks
Jonathan Rhoad
Assistant Professor
Department of Chemistry
Missouri Western State University
ifort -FR -o sander trace.o lmod.o decomp.o icosasurf.o egb.o findmask.o pb_force.o sander.o cshf.o noecalc.o noeread.o caldis.o calrate.o dinten.o drates.o indexn.o kmat.o pearsn.o plane.o remarc.o nmrcal.o nmrred.o restal.o getnat.o nmrnrg.o modwt.o disnrg.o angnrg.o tornrg.o nmrprt.o nmrgrp.o nmrcms.o nmrcmf.o impnum.o nmrsht.o at2res.o chklin.o opnmrg.o printe.o runmin.o ndvprt.o force.o rdparm.o mdread.o locmem.o runmd.o getcor.o r6ave.o r6drv.o aveint.o degcnt.o corf.o threeb.o tripl.o nmrrad.o decnvh.o fastwt.o echoin.o parallel.o jnrg.o shake.o ene.o mdwrit.o minrit.o set.o setmm.o dynlib.o mdfil.o nmlsrc.o ew_force.o ew_setup.o ew_box.o ew_bspline.o ew_fft.o ew_direct.o ew_recip.o pcshift.o align.o rstack.o istack.o rfree.o rgroup.o random.o lsqfit.o amopen.o debug.o ew_recip_reg.o ew_handle_dips.o ew_dipole_recip.o mexit.o new_time.o extra_pts.o thermo_int.o matinv.o assert.o mmtsb.o mmtsb_client.o erfcfun.o veclib.o mdm.o pb_init.o constantph.o prn_dipoles.o \
../lmod/lmod.a -lsvml \
../lapack/lapack.a ../blas/blas.a ../lib/nxtsec.o ../lib/sys.a
ld: warning: i386:x86-64 architecture of input file `mmtsb_client.o' is incompatible with i386 output
ld: warning: i386:x86-64 architecture of input file `../lib/sys.a(wallclock.o)' is incompatible with i386 output
ifort: error: Fatal error in ld, terminated by segmentation violation
make[1]: *** [sander] Error 1
make[1]: Leaving directory `/usr/local/amber8/src/sander'
make: *** [serial] Error 2
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Received on Sat Feb 04 2006 - 06:10:07 PST
