From: shuli kang <>
Date: Mon, 13 Feb 2006 20:26:07 +0800

Dear amber users,
I`m trying to evaluate the secondary structure change of a protein
during simulations as functions of time. The do_dssp programme in
GROMACS package could compute the secondary structure for each time
frame calling the dssp program.
However, this programme doesn't work with amber trajactory files.
Maybe some conversion required for this purpose. Could anybody give me
some suggestion?

Thanks in advance!

Modern Virology Research Center
College of Life Sciences,
Wuhan University
Wuhan, P. R. China, 430072
The AMBER Mail Reflector
To post, send mail to
To unsubscribe, send "unsubscribe amber" to
Received on Sun Feb 19 2006 - 06:10:07 PST
Custom Search