Date: Wed, 15 Feb 2006 10:26:36 +0100
From: "Dr.Rudolf Friedemann" <....>
Subject: Re: AMBER: Istallation AMBER8
To: amber.scripps.edu
here now something more of the .log file
> Starting installation of Amber8 (serial) at Fri Feb 10 14:29:31 MET 2006.
> mkdir ../exe
> mkdir: Failed to make directory "../exe"; File exists
> *** Error code 2 (ignored)
> cd lib; make install
> /lib/cpp -P -I/usrurz/amber8/src/include new2oldparm.f > _new2oldparm.f
> f90 -c -O1 -o new2oldparm.o _new2oldparm.f
> /lib/cpp -P -I/usrurz/amber8/src/include nxtsec.f > _nxtsec.f
> f90 -c -O1 -o nxtsec.o _nxtsec.f
> f90 -o new2oldparm new2oldparm.o nxtsec.o
> mv new2oldparm ../../exe
> /bin/rm _*.f
> cd addles; make install
> /lib/cpp -P -I/usrurz/amber8/src/include lesmain.f > _lesmain.f
> f90 -c -O1 -o lesmain.o _lesmain.f
> /lib/cpp -P -I/usrurz/amber8/src/include addspace.f > _addspace.f
> f90 -c -O1 -o addspace.o _addspace.f
> /lib/cpp -P -I/usrurz/amber8/src/include readprm.f > _readprm.f
> f90 -c -O1 -o readprm.o _readprm.f
> /lib/cpp -P -I/usrurz/amber8/src/include writprm.f > _writprm.f
> f90 -c -O1 -o writprm.o _writprm.f
> /lib/cpp -P -I/usrurz/amber8/src/include readcrd.f > _readcrd.f
> f90 -c -O1 -o readcrd.o _readcrd.f
> /lib/cpp -P -I/usrurz/amber8/src/include writcrd.f > _writcrd.f
> f90 -c -O1 -o writcrd.o _writcrd.f
> /lib/cpp -P -I/usrurz/amber8/src/include pick.f > _pick.f
> f90 -c -O1 -o pick.o _pick.f
> /lib/cpp -P -I/usrurz/amber8/src/include rline.f > _rline.f
> f90 -c -O1 -o rline.o _rline.f
> /lib/cpp -P -I/usrurz/amber8/src/include nxt.f > _nxt.f
> f90 -c -O1 -o nxt.o _nxt.f
> /lib/cpp -P -I/usrurz/amber8/src/include intgr.f > _intgr.f
> f90 -c -O1 -o intgr.o _intgr.f
> /lib/cpp -P -I/usrurz/amber8/src/include find.f > _find.f
> f90 -c -O1 -o find.o _find.f
> /lib/cpp -P -I/usrurz/amber8/src/include of.f > _of.f
> f90 -c -O1 -o of.o _of.f
> /lib/cpp -P -I/usrurz/amber8/src/include geti.f > _geti.f
> f90 -c -O1 -o geti.o _geti.f
> /lib/cpp -P -I/usrurz/amber8/src/include unit.f > _unit.f
> f90 -c -O1 -o unit.o _unit.f
> /lib/cpp -P -I/usrurz/amber8/src/include getc.f > _getc.f
> f90 -c -O1 -o getc.o _getc.f
> /lib/cpp -P -I/usrurz/amber8/src/include alert.f > _alert.f
> f90 -c -O1 -o alert.o _alert.f
> /lib/cpp -P -I/usrurz/amber8/src/include echo.f > _echo.f
> f90 -c -O1 -o echo.o _echo.f
> /lib/cpp -P -I/usrurz/amber8/src/include get4c.f > _get4c.f
> f90 -c -O1 -o get4c.o _get4c.f
> /lib/cpp -P -I/usrurz/amber8/src/include getd.f > _getd.f
> f90 -c -O1 -o getd.o _getd.f
> /lib/cpp -P -I/usrurz/amber8/src/include wlesprm.f > _wlesprm.f
...................................................................................................................
> cc -c -I/usr/openwin/include -DSYSV -o xaTools.o xaTools.c
> "./xaLogo.xbm", line 12: warning: initializer does not fit or is out
> of range: 140
> "./xaLogo.xbm", line 12: warning: initializer does not fit or is out
> of range: 254
> "./xaLogo.xbm", line 12: warning: initializer does not fit or is out
> of range: 128
> "./xaLogo.xbm", line 13: warning: initializer does not fit or is out
> of range: 140
> "./xaLogo.xbm", line 13: warning: initializer does not fit or is out
> of range: 254
> "./xaLogo.xbm", line 13: warning: initializer does not fit or is out
> of range: 128
> "./xaLogo.xbm", line 15: warning: initializer does not fit or is out
> of range: 134
> "./xaLogo.xbm", line 15: warning: initializer does not fit or is out
> of range: 128
> "./xaLogo.xbm", line 16: warning: initializer does not fit or is out
> of range: 134
> "./xaLogo.xbm", line 17: warning: initializer does not fit or is out
> of range: 128
> "./xaLogo.xbm", line 18: warning: initializer does not fit or is out
> of range: 130
> "./xaLogo.xbm", line 18: warning: initializer does not fit or is out
> of range: 128
> "./xaLogo.xbm", line 19: warning: initializer does not fit or is out
> of range: 192
> "./xaLogo.xbm", line 19: warning: initializer does not fit or is out
> of range: 131
> "./xaLogo.xbm", line 20: warning: initializer does not fit or is out
> of range: 128
> "./xaLogo.xbm", line 20: warning: initializer does not fit or is out
> of range: 146
> "./xaLogo.xbm", line 21: warning: initializer does not fit or is out
> of range: 192
> "./xaLogo.xbm", line 21: warning: initializer does not fit or is out
> of range: 131
> "./xaLogo.xbm", line 21: warning: initializer does not fit or is out
> of range: 128
> "./xaLogo.xbm", line 23: warning: initializer does not fit or is out
> of range: 128
> "./xaLogo.xbm", line 23: warning: initializer does not fit or is out
> of range: 129
> of range: 171
> "./exclaim.xbm", line 12: warning: initializer does not fit or is out
> of range: 128
> "./exclaim.xbm", line 12: warning: initializer does not fit or is out
> of range: 170
> cc -c -I/usr/openwin/include -DSYSV -o xaAtomParmTable.o
> xaAtomParmTable.c
> cc -c -I/usr/openwin/include -DSYSV -o xaBondParmTable.o
> xaBondParmTable.c
> cc -c -I/usr/openwin/include -DSYSV -o xaAngleParmTable.o
> xaAngleParmTable.c
> cc -c -I/usr/openwin/include -DSYSV -o xaParmEditor.o xaParmEditor.c
> cc -c -I/usr/openwin/include -DSYSV -o xaTorsionParmTable.o
> xaTorsionParmTable.c
> cc -c -I/usr/openwin/include -DSYSV -o xaImproperParmTable.o
> xaImproperParmTable.c
> cc -c -I/usr/openwin/include -DSYSV -o xaHBondParmTable.o
> xaHBondParmTable.c
> cc -o xaLeap basics.o sysdepend.o stringExtra.o varArray.o
> getline.o avl.o pdb_format.o pdb_read.o pdb_sprntf.o pdb_sscanf.o
> pdb_write.o vector.o zMatrix.o sort.o bag.o hash.o dictionary.o
> database.o nVector.o ring.o matrix.o fortran.o displayer.o assoc.o
> atom.o byteArray.o collection.o container.o internal.o list.o loop.o
> molecule.o oDouble.o oInteger.o oString.o objekt.o parmSet.o residue.o
> unit.o unitio.o tripos.o graphUtil.o select.o amber.o build.o
> elements.o library.o chirality.o minimizer.o model.o parmLib.o
> pdbFile.o tools.o variables.o parser.o help.o helptext.o octree.o
> commands.o mathop.o block.o restraint.o hybrid.o xTank.o xAction.o
> x3d.o xBasics.o xaLeapc.o xaUnitEditor.o xaTable.o xaAtomTable.o
> XrawRegistr.o xaCommand.o xaTools.o xaAtomParmTable.o
> xaBondParmTable.o xaAngleParmTable.o xaParmEditor.o
> xaTorsionParmTable.o xaImproperParmTable.o xaHBondParmTable.o
> ../Xraw/libXaw.a ../Wc/libWcLeap.a ../Xpm/libXpm.a ../Xmu/libXmu.a
> -L/usr/openwin/lib -lXt -lXext -lSM -lICE -lX11 -lm -lpthread
> m4 xaLeap.rm4 > XaLeap_wcl
>
> m4:xaLeap.rm4:993 pushed back more than 4096 chars
> define(TABLE_SHELL,XaLeap*$1TableShell.wcClassName: TopLevelShell
> XaLeap*$1TableShell.wcChildren: $1TablePanel
> XaLeap*$1TableShell.wcCallback: XATRegisterShell()
> XaLeap*$1TableShell.wcPopups: findDialog
> XaLeap*$1TableShell.title: XLEaP: $2
> XaLeap*$1TableShell.iconName: $2
> XaLeap*$1TableShell.iconPixmap: table1
> XaLeap*$1TableShell.destroyCallback: $3 WcDestroyCB( .*findDialog )
>
> XaLeap*$1TableShell.wcAfterChildren: \
> XASetPopdown( .*findDialog .*$1Find .*findDialog*cancel)
>
>
> !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
> !! The name of this widget is using in file xaTable.c (XATSaveTable)
> !!
> DIALOG_QUEST_OK_CANCEL(verify_save_none_corect_table,\
> The table is not correct !! \n\
> Do you really want to save the table ?
> \n,XATReallySaveTable(//),,,Save notify,Save,Cancel))
> *** Error code 1
> make: Fatal error: Command failed for target `XaLeap_wcl'
> Current working directory /usrurz/amber8/src/leap/src/leap
> *** Error code 1
> make: Fatal error: Command failed for target `install'
> Current working directory /usrurz/amber8/src/leap
> *** Error code 1
> make: Fatal error: Command failed for target `serial'
Thank you
Rudolf
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Received on Sun Feb 19 2006 - 06:10:15 PST
