Amber Archive Nov 2023 by thread
- [AMBER] reference potential alchemical calculation Pietro Vidossich via AMBER (Tue Oct 31 2023 - 18:34:42 PDT)
- [AMBER] Query regarding pi-pi stacking interaction Sourav Bhowmik via AMBER (Wed Nov 01 2023 - 00:41:17 PDT)
- [AMBER] Regarding lie command- linear interaction energy Jenny 148 via AMBER (Wed Nov 01 2023 - 02:03:46 PDT)
- [AMBER] CpHMD question Matthew Guberman-Pfeffer via AMBER (Wed Nov 01 2023 - 17:32:02 PDT)
- [AMBER] Bug in savepdb command Ye Mei via AMBER (Wed Nov 01 2023 - 18:59:05 PDT)
- [AMBER] Continuous constant pH MD Skanda Sastry via AMBER (Thu Nov 02 2023 - 00:31:27 PDT)
- [AMBER] Error during re weighting in GaMD Munazzah Fatima Ansari via AMBER (Thu Nov 02 2023 - 02:36:26 PDT)
- [AMBER] RESP charge fitting error in MCPB.py Kandhan, Palanisamy via AMBER (Thu Nov 02 2023 - 10:54:46 PDT)
- [AMBER] Model a protein with Tyrosine anion Xiangwei Zhu via AMBER (Thu Nov 02 2023 - 13:34:48 PDT)
- [AMBER] Cucurbituril tutorial Hugo Yuset Samayoa Oviedo via AMBER (Thu Nov 02 2023 - 16:19:20 PDT)
- [AMBER] amber trajectory visualization issue: Kankana Bhattacharjee via AMBER (Fri Nov 03 2023 - 01:39:24 PDT)
- [AMBER] Amber22/AmberTools23 install issues with pmemd.cuda Ravi Abrol via AMBER (Fri Nov 03 2023 - 15:54:45 PDT)
- [AMBER] Modifying a bias .nc file for ABMD Michael Bruist via AMBER (Fri Nov 03 2023 - 18:45:17 PDT)
- [AMBER] cpptraj mask : Kankana Bhattacharjee via AMBER (Sun Nov 05 2023 - 10:35:00 PST)
- [AMBER] Rdf calculation: Kankana Bhattacharjee via AMBER (Sun Nov 05 2023 - 22:18:23 PST)
- [AMBER] Rdf calculation Jenny 148 via AMBER (Mon Nov 06 2023 - 00:26:40 PST)
- [AMBER] Thioester Bond Parameters Shah, Tejas V. via AMBER (Mon Nov 06 2023 - 08:44:02 PST)
- Re: [AMBER] questions about AmberTools installation from source Damas Joao CHST via AMBER (Tue Nov 07 2023 - 04:27:10 PST)
- [AMBER] Holding Host-Guest COM constant during binding enthalpy MD Meyer, Olivia \(meyerok\) via AMBER (Tue Nov 07 2023 - 11:00:49 PST)
- [AMBER] help with parallel GPUs for GaMD Martinez Noa, Yisel via AMBER (Tue Nov 07 2023 - 15:40:22 PST)
- [AMBER] MMPBSA mask VERONICA MARTIN HERNANDEZ via AMBER (Wed Nov 08 2023 - 07:45:12 PST)
- [AMBER] Compilation Failures? Jones De Andrade via AMBER (Wed Nov 08 2023 - 18:47:00 PST)
- [AMBER] problem about pmemd.cuda.MPI ning via AMBER (Thu Nov 09 2023 - 16:45:59 PST)
- [AMBER] Alcohol and water binary mixture system Singh,Ravi via AMBER (Thu Nov 09 2023 - 22:00:41 PST)
- [AMBER] Boost parameters for Accelerated MD Enrico Martinez via AMBER (Fri Nov 10 2023 - 01:28:06 PST)
- [AMBER] CUDA version for AMBER22 Mingxuan Jiang via AMBER (Fri Nov 10 2023 - 01:52:55 PST)
- [AMBER] Regarding maximum molecular system size Singh,Ravi via AMBER (Fri Nov 10 2023 - 03:09:07 PST)
- [AMBER] Comparing FF Energies: 99SB/14SB/19SB translated with parmed to Gromacs Albert Gauss via AMBER (Fri Nov 10 2023 - 03:30:29 PST)
- [AMBER] Command 'combine' in 'tleap' Introducing 'TER' Between Residues Yu Chen via AMBER (Fri Nov 10 2023 - 10:23:02 PST)
- [AMBER] Enquiry about the Best way to Simulate Phosphorylated Tyrosines Mingxuan Jiang via AMBER (Fri Nov 10 2023 - 11:31:46 PST)
- Re: [AMBER] fcc_metals.lib not found Setyanto Md via AMBER (Sat Nov 11 2023 - 18:33:09 PST)
- [AMBER] In which order do dihedral types override in main parameter sets? He, Amy via AMBER (Sun Nov 12 2023 - 01:46:26 PST)
- [AMBER] Split a .nc file Singh,Ravi via AMBER (Sun Nov 12 2023 - 03:20:54 PST)
- [AMBER] Problem in Conversion from .nc to mdcrd file Singh,Ravi via AMBER (Sun Nov 12 2023 - 14:11:59 PST)
- [AMBER] Polarizabilitiy Calculations Gillispie, Nathan via AMBER (Sun Nov 12 2023 - 15:27:05 PST)
- [AMBER] cyclic peptide in water box Sepideh Jafari via AMBER (Mon Nov 13 2023 - 00:29:35 PST)
- [AMBER] Extracting MD snaphots: Kankana Bhattacharjee via AMBER (Mon Nov 13 2023 - 01:34:29 PST)
- [AMBER] Use of IPolQ scheme for macromolecular complexes Jakub Jakubec via AMBER (Tue Nov 14 2023 - 02:16:20 PST)
- [AMBER] MMGBSA descomposition VERONICA MARTIN HERNANDEZ via AMBER (Tue Nov 14 2023 - 07:24:56 PST)
- [AMBER] Error: Incompatible CUDA and GNU versions Info via AMBER (Tue Nov 14 2023 - 07:39:37 PST)
- [AMBER] Compilation Question Matthew Guberman-Pfeffer via AMBER (Tue Nov 14 2023 - 10:52:07 PST)
- [AMBER] Residue type in input pdb Prithviraj Nandigrami via AMBER (Tue Nov 14 2023 - 13:46:27 PST)
- [AMBER] Error in MMPBSA VERONICA MARTIN HERNANDEZ via AMBER (Wed Nov 15 2023 - 04:10:27 PST)
- [AMBER] Updated Benchmarks including new ADA series GPUs Ross Walker via AMBER (Wed Nov 15 2023 - 08:44:20 PST)
- [AMBER] PBSA error Matthew Guberman-Pfeffer via AMBER (Wed Nov 15 2023 - 12:43:23 PST)
- [AMBER] Issues in Modified nucleotide parametrization using Antechamber and Parmchk2 Priyasha Majee via AMBER (Thu Nov 16 2023 - 05:24:08 PST)
- [AMBER] No build when downloading amber22 Johannes Loeffler via AMBER (Thu Nov 16 2023 - 07:21:00 PST)
- [AMBER] Announcement: Release of DOCK 6.11 Scott Brozell via AMBER (Thu Nov 16 2023 - 12:03:40 PST)
- [AMBER] RESP fitting in solvent Jakub Jakubec via AMBER (Fri Nov 17 2023 - 07:30:06 PST)
- Re: [AMBER] MCPB, negative force constant? Pengfei Li via AMBER (Fri Nov 17 2023 - 12:07:34 PST)
- Re: [AMBER] R: Inquiry about PMEMD.CUDA availability in non-commercial license David A Case via AMBER (Sun Nov 19 2023 - 10:16:40 PST)
- [AMBER] antechamber error-- QMMM: System specified with odd number of electrons Yang, Li-Yen via AMBER (Wed Nov 29 2023 - 15:24:34 PST)
- [AMBER] amber 20 installing error on Rocky linux 9.1 东不拉 via AMBER (Wed Nov 29 2023 - 22:43:44 PST)
- [AMBER] Looking for a force field with ester linkages between protein chains permitted. David Cowburn via AMBER (Thu Nov 30 2023 - 10:13:35 PST)
- [AMBER] pocket volume calculation Sruthi Sudhakar via AMBER (Tue Nov 28 2023 - 05:14:22 PST)
- [AMBER] Would AMBER suit my purpose? Mignolet, Alex via AMBER (Thu Nov 30 2023 - 13:51:23 PST)
- Re: [AMBER] Reproduce a Simulation Skanda Sastry via AMBER (Thu Nov 30 2023 - 20:16:02 PST)
- Last message date: Thu Nov 30 2023 - 20:30:02 PST
- Archived on: Fri Apr 26 2024 - 05:56:20 PDT
