[AMBER] Fwd: pocket volume calculation

From: Sruthi Sudhakar via AMBER <amber.ambermd.org>
Date: Wed, 29 Nov 2023 20:48:13 +0530

Dear all,

We are working on an RNA-binding protein. During the simulation, the volume
of the groove that binds the RNA changes after a particular protein
mutation. Is there a way to quantify this pocket volume throughout the
trajectory? Any help is appreciated.


Regards,
Sruthi Sudhakar
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Received on Thu Nov 30 2023 - 11:30:02 PST