Amber Archive Nov 2023 by subject
- [AMBER] [EXTERNAL] Error: Incompatible CUDA and GNU versions
- [AMBER] [Sender Not Verified] Extracting MD snaphots:
- [AMBER] Alcohol and water binary mixture system
- [AMBER] amber 20 installing error on Rocky linux 9.1
- [AMBER] amber trajectory visualization issue:
- [AMBER] Amber22/AmberTools23 install issues with pmemd.cuda
- [AMBER] Announcement: Release of DOCK 6.11
- [AMBER] antechamber error-- QMMM: System specified with odd number of electrons
- [AMBER] Boost parameters for Accelerated MD
- [AMBER] Bug in savepdb command
- [AMBER] Command 'combine' in 'tleap' Introducing 'TER' Between Residues
- [AMBER] Comparing FF Energies: 99SB/14SB/19SB translated with parmed to Gromacs
- [AMBER] Compilation Failures?
- [AMBER] Compilation Question
- [AMBER] Continuous constant pH MD
- [AMBER] CpHMD question
- [AMBER] cpptraj mask :
- [AMBER] Cucurbituril tutorial
- [AMBER] CUDA version for AMBER22
- [AMBER] cyclic peptide in water box
- [AMBER] Enquiry about the Best way to Simulate Phosphorylated Tyrosines
- [AMBER] Error during re weighting in GaMD
- [AMBER] Error in MMPBSA
- [AMBER] Error: Incompatible CUDA and GNU versions
- [AMBER] Extracting MD snaphots:
- [AMBER] fcc_metals.lib not found
- [AMBER] Fwd: pocket volume calculation
- [AMBER] help with parallel GPUs for GaMD
- [AMBER] Holding Host-Guest COM constant during binding enthalpy MD
- [AMBER] In which order do dihedral types override in main parameter sets?
- [AMBER] Issues in Modified nucleotide parametrization using Antechamber and Parmchk2
- [AMBER] Looking for a force field with ester linkages between protein chains permitted.
- [AMBER] MCPB, negative force constant?
- [AMBER] MMGBSA descomposition
- [AMBER] MMPBSA mask
- [AMBER] Model a protein with Tyrosine anion
- [AMBER] Modifying a bias .nc file for ABMD
- [AMBER] No build when downloading amber22
- [AMBER] PBSA error
- [AMBER] pocket volume calculation
- [AMBER] Polarizabilitiy Calculations
- [AMBER] problem about pmemd.cuda.MPI
- [AMBER] Problem in Conversion from .nc to mdcrd file
- [AMBER] Query regarding pi-pi stacking interaction
- [AMBER] questions about AmberTools installation from source
- [AMBER] R: Inquiry about PMEMD.CUDA availability in non-commercial license
- [AMBER] Rdf calculation
- [AMBER] Rdf calculation:
- [AMBER] reference potential alchemical calculation
- [AMBER] Regarding lie command- linear interaction energy
- [AMBER] Regarding maximum molecular system size
- [AMBER] Reproduce a Simulation
- [AMBER] Residue type in input pdb
- [AMBER] RESP charge fitting error in MCPB.py
- [AMBER] RESP fitting in solvent
- [AMBER] Split a .nc file
- [AMBER] Thioester Bond Parameters
- [AMBER] Updated Benchmarks including new ADA series GPUs
- [AMBER] Use of IPolQ scheme for macromolecular complexes
- [AMBER] Would AMBER suit my purpose?
- [AMBER] 回复: Query regarding pi-pi stacking interaction
- Last message date: Thu Nov 30 2023 - 20:30:02 PST
- Archived on: Fri Dec 20 2024 - 05:56:17 PST