[AMBER] Rdf calculation

From: Jenny 148 via AMBER <amber.ambermd.org>
Date: Mon, 6 Nov 2023 13:56:40 +0530

Dear all,

I have seen a paper where rdf is used to show the propensity of one atom of
a ligand to a dna groove region. If I want to show the propensity of one of
the rings of my ligand around an aromatic amino acid, could use the same
technique.? Rdf by mentioning the com of both these residues as mask. Will
it be meaningful?

Kindly advise.
AMBER mailing list
Received on Mon Nov 06 2023 - 01:00:02 PST
Custom Search