Amber Archive Mar 2022: by author

Alexis Azucena
- Re: [AMBER] CUDART lib not found during install (Sun Mar 06 2022 - 15:26:03 PST)
- Re: [AMBER] Clarification in 3DRISM (Mon Feb 28 2022 - 17:54:20 PST)
Alysia Mandato
- [AMBER] TLEAP error when adding Ag+ (Mon Mar 07 2022 - 12:23:56 PST)
angad sharma
- [AMBER] Convergence issue in rism1d (Thu Mar 10 2022 - 23:07:17 PST)
Anita Meena
- [AMBER] [AMBER ] cudaMemcpy GpuBuffer::Download failed an illegal memory access was encountered. (Wed Mar 23 2022 - 22:05:29 PDT)
- Re: [AMBER] [Amber]Not able to generate eq_density.cpptraj file while doing QM/MM calculations (Wed Mar 09 2022 - 23:19:10 PST)
- Re: [AMBER] [Amber]Not able to generate eq_density.cpptraj file while doing QM/MM calculations (Tue Mar 08 2022 - 22:03:49 PST)
- [AMBER] [Amber]Not able to generate eq_density.cpptraj file while doing QM/MM calculations (Mon Mar 07 2022 - 21:18:33 PST)
Antonija Tomić
- Re: [AMBER] problems installing Amber20 + AmberTools21 parallel version with open-mpi (Tue Mar 15 2022 - 11:45:22 PDT)
- Re: [AMBER] problems installing Amber20 + AmberTools21 parallel version with open-mpi (Mon Mar 14 2022 - 23:56:38 PDT)
- Re: [AMBER] problems installing Amber20 + AmberTools21 parallel version with open-mpi (Mon Mar 14 2022 - 02:44:18 PDT)
- Re: [AMBER] problems installing Amber20 + AmberTools21 parallel version with open-mpi (Fri Mar 11 2022 - 05:44:54 PST)
- [AMBER] problems installing Amber20 + AmberTools21 parallel version with open-mpi (Fri Mar 11 2022 - 04:28:07 PST)
Aravind R
- [AMBER] Entropy calculations upon covalent modification (Wed Mar 30 2022 - 04:09:12 PDT)
Bhakti Hirlekar
- [AMBER] Atom coordinate disagreement error in running the TI calculation (Thu Mar 24 2022 - 22:33:59 PDT)
Bruno Cramer
- [AMBER] glibc causing amber install error (Mon Mar 07 2022 - 12:56:34 PST)
Carlos Simmerling
- Re: [AMBER] Error in parameter file preparation (Tue Mar 29 2022 - 03:56:43 PDT)
- Re: [AMBER] PMEMD does not support single H residues! (Thu Mar 24 2022 - 20:08:36 PDT)
- Re: [AMBER] D-amino acids (Wed Mar 23 2022 - 09:27:15 PDT)
- Re: [AMBER] Problem with production run of cyclic peptide (Tue Mar 22 2022 - 06:54:47 PDT)
- Re: [AMBER] Query related to TIMD (Tue Mar 22 2022 - 06:53:42 PDT)
- Re: [AMBER] Small Cutoffs Not Supported for Implicit Solvent GPU Simulation Runs (Mon Mar 21 2022 - 10:34:14 PDT)
- Re: [AMBER] T-REMD (Fri Mar 18 2022 - 04:32:21 PDT)
- Re: [AMBER] T-REMD (Fri Mar 18 2022 - 04:18:19 PDT)
- Re: [AMBER] A way to stop simulations when certain criteria are met? (Thu Mar 17 2022 - 10:28:24 PDT)
- Re: [AMBER] question about ATP-Mg2+ binding system (Wed Mar 16 2022 - 08:52:11 PDT)
- Re: [AMBER] How to read netcdf files on VMD Windows version? (Mon Mar 14 2022 - 11:44:38 PDT)
- Re: [AMBER] How to read netcdf files on VMD Windows version? (Mon Mar 14 2022 - 04:43:13 PDT)
- Re: [AMBER] Request help modifying a force field (Sun Mar 13 2022 - 08:53:57 PDT)
- Re: [AMBER] tleap: keep crystallographic waters? (Thu Mar 10 2022 - 16:12:13 PST)
chanyann06.stu.scu.edu.cn
- [AMBER] Unit cell size changed and coords overlap problems (Thu Mar 10 2022 - 18:00:49 PST)
- [AMBER] Unit cell size changed and coords overlap problems (Wed Mar 09 2022 - 23:45:38 PST)
Charlotta Lebedenko
- Re: [AMBER] CUDART lib not found during install (Thu Mar 10 2022 - 15:22:15 PST)
- Re: [AMBER] CUDART lib not found during install (Sun Mar 06 2022 - 10:43:59 PST)
- Re: [AMBER] CUDART lib not found during install (Thu Mar 03 2022 - 12:30:50 PST)
- Re: [AMBER] CUDART lib not found during install (Wed Mar 02 2022 - 13:27:27 PST)
Chen, Guoquan
- [AMBER] Amber20 installation error (Fri Mar 25 2022 - 15:23:03 PDT)
Chris Lee
- [AMBER] A way to stop simulations when certain criteria are met? (Wed Mar 16 2022 - 12:31:47 PDT)
Christian Schafmeister
- [AMBER] Modeling cis-amide bonds in diketopiperazines (Mon Mar 14 2022 - 08:03:20 PDT)
Daniel Konstantinovsky
- Re: [AMBER] D-amino acids (Wed Mar 23 2022 - 09:45:28 PDT)
- [AMBER] D-amino acids (Wed Mar 23 2022 - 09:05:53 PDT)
- Re: [AMBER] tleap: keep crystallographic waters? (Fri Mar 11 2022 - 07:13:34 PST)
- [AMBER] tleap: keep crystallographic waters? (Thu Mar 10 2022 - 16:05:54 PST)
Daniel Roe
- Re: [AMBER] CPPTRAJ, Counting Per Residue Pair H-Bonding (Wed Mar 30 2022 - 17:44:26 PDT)
- Re: [AMBER] CPPTRAJ, Counting Per Residue Pair H-Bonding (Wed Mar 30 2022 - 17:14:34 PDT)
- Re: [AMBER] CPPTRAJ, Counting Per Residue Pair H-Bonding (Wed Mar 30 2022 - 16:31:07 PDT)
- Re: [AMBER] CPPTRAJ, Counting Per Residue Pair H-Bonding (Wed Mar 30 2022 - 16:05:17 PDT)
- Re: [AMBER] CPPTRAJ, Counting Per Residue Pair H-Bonding (Wed Mar 30 2022 - 13:54:47 PDT)
- Re: [AMBER] CPPTRAJ, Counting Per Residue Pair H-Bonding (Wed Mar 30 2022 - 13:54:23 PDT)
- Re: [AMBER] CPPTRAJ, Counting Per Residue Pair H-Bonding (Wed Mar 30 2022 - 12:27:12 PDT)
- Re: [AMBER] [AMBER ] cudaMemcpy GpuBuffer::Download failed an illegal memory access was encountered. (Thu Mar 24 2022 - 09:48:25 PDT)
- Re: [AMBER] How to visualize the results generated from the analysis of MD trajectory using Cpptraj in AMBER16 ? (Thu Mar 24 2022 - 08:14:31 PDT)
- Re: [AMBER] CPPTRAJ, Conflicting H-Bonding Results (Fri Mar 18 2022 - 06:35:54 PDT)
- Re: [AMBER] Stripping waters from trajectory except those forming bridged H-bond between Protein and Ligand (Wed Mar 16 2022 - 13:06:37 PDT)
- Re: [AMBER] Stripping waters from trajectory except those forming bridged H-bond between Protein and Ligand (Mon Mar 14 2022 - 08:19:42 PDT)
- Re: [AMBER] CUDART lib not found during install (Fri Mar 11 2022 - 12:06:27 PST)
- Re: [AMBER] Unit cell size changed and coords overlap problems (Fri Mar 11 2022 - 08:44:10 PST)
- Re: [AMBER] Unit cell size changed and coords overlap problems (Thu Mar 10 2022 - 09:57:13 PST)
- Re: [AMBER] [Amber]Not able to generate eq_density.cpptraj file while doing QM/MM calculations (Thu Mar 10 2022 - 08:52:19 PST)
- Re: [AMBER] [Amber]Not able to generate eq_density.cpptraj file while doing QM/MM calculations (Wed Mar 09 2022 - 09:40:03 PST)
- Re: [AMBER] CUDART lib not found during install (Mon Mar 07 2022 - 15:38:34 PST)
- Re: [AMBER] Failed to generate rst file in partially deleted structure (Mon Mar 07 2022 - 15:35:52 PST)
- Re: [AMBER] Watershell like command for lipids (Mon Mar 07 2022 - 08:04:00 PST)
- Re: [AMBER] CUDART lib not found during install (Mon Mar 07 2022 - 03:49:28 PST)
- Re: [AMBER] How to use artificial covariance matrix in PCA analysis of cpptraj? (Fri Mar 04 2022 - 06:49:24 PST)
- Re: [AMBER] CUDART lib not found during install (Thu Mar 03 2022 - 06:31:31 PST)
Daniella Hares
- [AMBER] Entropy calculations in GIST (Tue Mar 08 2022 - 05:44:10 PST)
David A Case
- Re: [AMBER] problem with using amber (Thu Mar 31 2022 - 05:06:13 PDT)
- Re: [AMBER] Toluene solvent box equilibration (Thu Mar 31 2022 - 05:02:06 PDT)
- Re: [AMBER] Entropy calculations upon covalent modification (Wed Mar 30 2022 - 05:54:35 PDT)
- Re: [AMBER] How to use GPU and GLYCAM force fields (Wed Mar 30 2022 - 05:39:14 PDT)
- Re: [AMBER] Amber20 installation error (Fri Mar 25 2022 - 19:08:37 PDT)
- Re: [AMBER] Small Cutoffs Not Supported for Implicit Solvent GPU Simulation Runs (Tue Mar 22 2022 - 13:13:02 PDT)
- Re: [AMBER] Small Cutoffs Not Supported for Implicit Solvent GPU Simulation Runs (Mon Mar 21 2022 - 10:13:42 PDT)
- Re: [AMBER] PySander availability in PyTraj (Fri Mar 18 2022 - 06:02:51 PDT)
- Re: [AMBER] Hubbard derivative not found and element Na not supported for a QM/MM system (Thu Mar 17 2022 - 05:00:28 PDT)
- Re: [AMBER] question about ATP-Mg2+ binding system (Wed Mar 16 2022 - 10:35:10 PDT)
- Re: [AMBER] Regarding treating ligand with QM level of theory (Wed Mar 16 2022 - 07:43:00 PDT)
- Re: [AMBER] problems installing Amber20 + AmberTools21 parallel version with open-mpi (Wed Mar 16 2022 - 05:18:31 PDT)
- Re: [AMBER] problems installing Amber20 + AmberTools21 parallel version with open-mpi (Tue Mar 15 2022 - 05:42:36 PDT)
- Re: [AMBER] I cannot find NAB in AmberTools 21 (Tue Mar 15 2022 - 05:40:13 PDT)
- Re: [AMBER] problems installing Amber20 + AmberTools21 parallel version with open-mpi (Mon Mar 14 2022 - 10:26:49 PDT)
- Re: [AMBER] Non-Integer Charge for Systems Comprised of Large Number of Residues (Sun Mar 13 2022 - 13:06:10 PDT)
- Re: [AMBER] tleap: keep crystallographic waters? (Fri Mar 11 2022 - 08:30:02 PST)
- Re: [AMBER] problems installing Amber20 + AmberTools21 parallel version with open-mpi (Fri Mar 11 2022 - 08:28:00 PST)
- Re: [AMBER] problems installing Amber20 + AmberTools21 parallel version with open-mpi (Fri Mar 11 2022 - 05:02:14 PST)
- Re: [AMBER] Convergence issue in rism1d (Fri Mar 11 2022 - 04:56:37 PST)
- Re: [AMBER] tleap: keep crystallographic waters? (Thu Mar 10 2022 - 17:36:32 PST)
- Re: [AMBER] Penalty Scores for Amino Acid Dihedral Parameters (Wed Mar 09 2022 - 06:08:05 PST)
- Re: [AMBER] [Amber]Not able to generate eq_density.cpptraj file while doing QM/MM calculations (Tue Mar 08 2022 - 05:06:13 PST)
- Re: [AMBER] glibc causing amber install error (Tue Mar 08 2022 - 05:01:27 PST)
- Re: [AMBER] TLEAP error when adding Ag+ (Mon Mar 07 2022 - 12:53:02 PST)
- Re: [AMBER] Asking MMPBSA.PY (Sat Mar 05 2022 - 05:44:12 PST)
- Re: [AMBER] Error in using multiple distance restraints in a single RST file (Wed Mar 02 2022 - 05:07:08 PST)
- Re: [AMBER] CPPTRAJ, Dipole autocorrelation? (Tue Mar 01 2022 - 16:43:01 PST)
David Poole
- [AMBER] MMPBSA.py.MPI and pytraj bugs (Tue Mar 22 2022 - 08:12:28 PDT)
- Re: [AMBER] PySander availability in PyTraj (Sat Mar 19 2022 - 15:33:40 PDT)
- [AMBER] PySander availability in PyTraj (Fri Mar 18 2022 - 05:08:08 PDT)
Debasish Mandal
- [AMBER] Error in parameter file preparation (Tue Mar 29 2022 - 00:04:07 PDT)
Divya Rai
- [AMBER] Error while running minimization run while doing thermodynamic integration. (Fri Mar 25 2022 - 00:48:31 PDT)
Dr. Anselm Horn
- Re: [AMBER] How to use GPU and GLYCAM force fields (Wed Mar 30 2022 - 00:37:47 PDT)
- Re: [AMBER] Tyrosine anion simulation (Tue Mar 29 2022 - 05:00:01 PDT)
- Re: [AMBER] A way to stop simulations when certain criteria are met? (Thu Mar 17 2022 - 10:02:40 PDT)
- Re: [AMBER] Request help modifying a force field (Sun Mar 13 2022 - 03:41:36 PDT)
- Re: [AMBER] Unit cell size changed and coords overlap problems (Thu Mar 10 2022 - 00:45:42 PST)
Elisa Frezza
- [AMBER] EZAFF force field (Mon Mar 07 2022 - 23:51:06 PST)
Elvis Martis
- Re: [AMBER] How to read netcdf files on VMD Windows version? (Sun Mar 13 2022 - 22:30:28 PDT)
Feng Pan
- Re: [AMBER] ** NFE-Error ** : Selection weight overflows, try smaller selection constant (Mon Mar 28 2022 - 11:34:54 PDT)
- Re: [AMBER] ** NFE-Error ** : Selection weight overflows, try smaller selection constant (Mon Mar 28 2022 - 10:52:14 PDT)
Feng Su
- [AMBER] problem with using amber (Wed Mar 30 2022 - 22:04:59 PDT)
Franz Waibl
- Re: [AMBER] Entropy calculations in GIST (Thu Mar 24 2022 - 10:07:05 PDT)
Gerardo Zerbetto De Palma
- Re: [AMBER] Cpptraj - Density Action Command Units (Thu Mar 03 2022 - 14:05:32 PST)
Grunewald, Lukas
- Re: [AMBER] 1D-RISM with 4-Point water models (Thu Mar 24 2022 - 09:06:28 PDT)
- [AMBER] 1D-RISM with 4-Point water models (Tue Mar 22 2022 - 03:32:44 PDT)
Hai Nguyen
- Re: [AMBER] PySander availability in PyTraj (Fri Mar 18 2022 - 06:45:44 PDT)
- Re: [AMBER] A way to stop simulations when certain criteria are met? (Thu Mar 17 2022 - 09:10:16 PDT)
Huimin Tian
- [AMBER] PMEMD does not support single H residues! (Thu Mar 24 2022 - 19:44:27 PDT)
Juliette Newell
- Re: [AMBER] T-REMD (Fri Mar 18 2022 - 04:27:41 PDT)
- [AMBER] T-REMD (Fri Mar 18 2022 - 02:57:03 PDT)
Kellon Belfon
- Re: [AMBER] Tyrosine anion simulation (Tue Mar 29 2022 - 09:53:05 PDT)
- Re: [AMBER] Tyrosine anion simulation (Tue Mar 29 2022 - 09:40:21 PDT)
Kenneth Huang
- Re: [AMBER] CPPTRAJ, Counting Per Residue Pair H-Bonding (Wed Mar 16 2022 - 13:48:10 PDT)
- Re: [AMBER] CPPTRAJ, Counting Per Residue Pair H-Bonding (Wed Mar 16 2022 - 09:30:26 PDT)
- Re: [AMBER] CPPTRAJ, Counting Per Residue Pair H-Bonding (Wed Mar 16 2022 - 07:37:57 PDT)
liu kai
- Re: [AMBER] AMBER Digest, Vol 3660, Issue 1 (Thu Mar 17 2022 - 19:15:06 PDT)
- Re: [AMBER] question about ATP-Mg2+ binding system (Wed Mar 16 2022 - 19:03:20 PDT)
- [AMBER] question about ATP-Mg2+ binding system (Wed Mar 16 2022 - 08:46:05 PDT)
M. Reza Ganjalikhany
- [AMBER] Installation errors of AmberTools 21 on Ubuntu 20.04 WSL2 (Sun Mar 20 2022 - 03:39:09 PDT)
Maria Nagan
- Re: [AMBER] The tutorial 6.8 Westpa Tutorials (Tue Mar 22 2022 - 18:33:49 PDT)
- Re: [AMBER] Error - corrupted size vs. prev_size (Tue Mar 22 2022 - 08:48:27 PDT)
Matthew Guberman-Pfeffer
- Re: [AMBER] CPPTRAJ, Counting Per Residue Pair H-Bonding (Thu Mar 31 2022 - 10:23:37 PDT)
- Re: [AMBER] CPPTRAJ, Counting Per Residue Pair H-Bonding (Wed Mar 30 2022 - 17:51:17 PDT)
- Re: [AMBER] CPPTRAJ, Counting Per Residue Pair H-Bonding (Wed Mar 30 2022 - 17:22:13 PDT)
- Re: [AMBER] CPPTRAJ, Counting Per Residue Pair H-Bonding (Wed Mar 30 2022 - 16:34:19 PDT)
- Re: [AMBER] CPPTRAJ, Counting Per Residue Pair H-Bonding (Wed Mar 30 2022 - 16:12:06 PDT)
- Re: [AMBER] CPPTRAJ, Counting Per Residue Pair H-Bonding (Wed Mar 30 2022 - 13:58:44 PDT)
- Re: [AMBER] CPPTRAJ, Counting Per Residue Pair H-Bonding (Wed Mar 30 2022 - 14:00:42 PDT)
- Re: [AMBER] CPPTRAJ, Counting Per Residue Pair H-Bonding (Wed Mar 30 2022 - 13:39:25 PDT)
- Re: [AMBER] {SPAM?} Re: Tyrosine anion simulation (Tue Mar 29 2022 - 05:53:51 PDT)
- Re: [AMBER] CPPTRAJ, Conflicting H-Bonding Results (Fri Mar 18 2022 - 06:44:08 PDT)
- [AMBER] CPPTRAJ, Conflicting H-Bonding Results (Thu Mar 17 2022 - 09:23:00 PDT)
- Re: [AMBER] CPPTRAJ, Counting Per Residue Pair H-Bonding (Wed Mar 16 2022 - 09:57:43 PDT)
- Re: [AMBER] CPPTRAJ, Counting Per Residue Pair H-Bonding (Wed Mar 16 2022 - 08:00:31 PDT)
- [AMBER] CPPTRAJ, Counting Per Residue Pair H-Bonding (Wed Mar 16 2022 - 06:45:28 PDT)
Ming Tang
- [AMBER] Is there a way to restart MMPBSA.py calculation? (Tue Mar 29 2022 - 16:58:50 PDT)
- [AMBER] Error when using mmpbsa_py_nabnmode in parallel (Sun Mar 13 2022 - 03:36:01 PDT)
- Re: [AMBER] calculate entropy using MMPBSA.py (Fri Mar 11 2022 - 16:05:57 PST)
- [AMBER] calculate entropy using MMPBSA.py (Thu Mar 10 2022 - 22:11:31 PST)
Mirza Ahmed Hammad
- Re: [AMBER] Calculate Lipid Surface Pressure/Tension from Lipid-Water Interface (Wed Mar 09 2022 - 01:15:40 PST)
Nathan Black
- Re: [AMBER] Unit 9 Error on OPEN: inpcrd When Running GPU Simulation on PMEMD.CUDA (Thu Mar 31 2022 - 06:47:45 PDT)
- [AMBER] Distance Restraints and/or Periodic Boundaries for Implicit Solvent (Tue Mar 29 2022 - 09:58:38 PDT)
- Re: [AMBER] Small Cutoffs Not Supported for Implicit Solvent GPU Simulation Runs (Tue Mar 22 2022 - 12:55:21 PDT)
- Re: [AMBER] Small Cutoffs Not Supported for Implicit Solvent GPU Simulation Runs (Tue Mar 22 2022 - 07:32:29 PDT)
- [AMBER] Small Cutoffs Not Supported for Implicit Solvent GPU Simulation Runs (Mon Mar 21 2022 - 07:28:16 PDT)
- [AMBER] Non-Integer Charge for Systems Comprised of Large Number of Residues (Sun Mar 13 2022 - 11:32:05 PDT)
- [AMBER] Penalty Scores for Amino Acid Dihedral Parameters (Tue Mar 08 2022 - 21:35:32 PST)
- [AMBER] Constant pH MD Simulations for General Organic Compounds (Mon Mar 07 2022 - 20:36:53 PST)
Pau Mayorga Delgado
- [AMBER] Problems with DFTB3 and Na in Amber (Mon Mar 21 2022 - 05:46:51 PDT)
- [AMBER] Hubbard derivative not found and element Na not supported for a QM/MM system (Thu Mar 17 2022 - 02:36:07 PDT)
Pedro Miguel Reis Figueiredo
- [AMBER] Toluene solvent box equilibration (Wed Mar 30 2022 - 13:17:02 PDT)
Prathit Chatterjee
- [AMBER] Error in using multiple distance restraints in a single RST file (Tue Mar 01 2022 - 18:37:04 PST)
priya murugan
- [AMBER] How to visualize the results generated from the analysis of MD trajectory using Cpptraj in AMBER16 ? (Thu Mar 24 2022 - 05:01:36 PDT)
Purnawan pontana putra
- [AMBER] Asking MMPBSA.PY (Fri Mar 04 2022 - 02:52:15 PST)
Rakesh Srivastava
- Re: [AMBER] Stripping waters from trajectory except those forming bridged H-bond between Protein and Ligand (Thu Mar 17 2022 - 01:42:35 PDT)
- Re: [AMBER] Stripping waters from trajectory except those forming bridged H-bond between Protein and Ligand (Mon Mar 14 2022 - 19:20:29 PDT)
- [AMBER] Stripping waters from trajectory except those forming bridged H-bond between Protein and Ligand (Fri Mar 11 2022 - 21:12:50 PST)
russ.brown.yahoo.com
- [AMBER] I cannot find NAB in AmberTools 21 (Mon Mar 14 2022 - 22:29:36 PDT)
- [AMBER] Request help modifying a force field (Fri Mar 11 2022 - 09:19:43 PST)
s.ohno.tohoku-mpu.ac.jp
- [AMBER] How to use GPU and GLYCAM force fields (Tue Mar 29 2022 - 23:24:03 PDT)
saranya.cbmm.lodz.pl
- Re: [AMBER] Error - corrupted size vs. prev_size (Tue Mar 22 2022 - 08:02:58 PDT)
SATYAJIT KHATUA
- [AMBER] Query related to TIMD (Mon Mar 21 2022 - 23:09:09 PDT)
Scott Brozell
- Re: [AMBER] Cannot install AmberTools 21 due to errors in getline.c file (Mon Mar 21 2022 - 12:22:45 PDT)
- Re: [AMBER] tleap error: "expected 'default'" (Mon Mar 14 2022 - 18:05:29 PDT)
Soumyajit Karmakar
- Re: [AMBER] Regarding treating ligand with QM level of theory (Wed Mar 16 2022 - 12:32:17 PDT)
- [AMBER] Regarding treating ligand with QM level of theory (Wed Mar 16 2022 - 03:53:03 PDT)
Sruthi Sudhakar
- Re: [AMBER] ** NFE-Error ** : Selection weight overflows, try smaller selection constant (Mon Mar 28 2022 - 11:08:19 PDT)
- [AMBER] ** NFE-Error ** : Selection weight overflows, try smaller selection constant (Mon Mar 28 2022 - 05:29:16 PDT)
- [AMBER] ** NFE-Error ** : Selection weight overflows, try smaller selection constant (Wed Mar 23 2022 - 21:57:29 PDT)
- [AMBER] Query regarding AMBER meta dynamics (Thu Mar 17 2022 - 02:00:19 PDT)
Suchetana Gupta
- [AMBER] Problem with production run of cyclic peptide (Mon Mar 21 2022 - 16:41:10 PDT)
- Re: [AMBER] How to read netcdf files on VMD Windows version? (Mon Mar 14 2022 - 12:55:24 PDT)
- Re: [AMBER] How to read netcdf files on VMD Windows version? (Mon Mar 14 2022 - 11:23:12 PDT)
- [AMBER] How to read netcdf files on VMD Windows version? (Sun Mar 13 2022 - 22:09:15 PDT)
Tanmoy Paul
- [AMBER] NFE-Error (Mon Mar 14 2022 - 11:00:22 PDT)
Thomas Cheatham
- Re: [AMBER] PMEMD does not support single H residues! (Thu Mar 24 2022 - 20:23:10 PDT)
- Re: [AMBER] [AMBER ] cudaMemcpy GpuBuffer::Download failed an illegal memory access was encountered. (Wed Mar 23 2022 - 22:15:00 PDT)
- Re: [AMBER] question about ATP-Mg2+ binding system (Wed Mar 16 2022 - 20:25:11 PDT)
- Re: [AMBER] calculate entropy using MMPBSA.py (Thu Mar 10 2022 - 22:33:26 PST)
tluchko
- Re: [AMBER] 1D-RISM with 4-Point water models (Thu Mar 24 2022 - 15:03:31 PDT)
- Re: [AMBER] 1D-RISM with 4-Point water models (Tue Mar 22 2022 - 10:30:03 PDT)
- Re: [AMBER] Convergence issue in rism1d (Mon Mar 14 2022 - 10:50:01 PDT)
Vaibhav Dixit
- Re: [AMBER] error preparing ligand parameters (Fri Mar 04 2022 - 07:04:37 PST)
Vic De Roo
- [AMBER] Watershell like command for lipids (Mon Mar 07 2022 - 03:56:47 PST)
Vinicius Wilian Cruzeiro
- Re: [AMBER] Constant pH MD Simulations for General Organic Compounds (Mon Mar 07 2022 - 20:43:33 PST)
wangjianing_mail
- [AMBER] How to use artificial covariance matrix in PCA analysis of cpptraj? (Fri Mar 04 2022 - 06:10:46 PST)
xiangyu
- [AMBER] mmpbsa.py divalent ion issue (Tue Mar 29 2022 - 21:57:13 PDT)
- [AMBER] mmpbsa divalent ion bug (Fri Mar 25 2022 - 00:26:58 PDT)
Yen Nguyen
- Re: [AMBER] Failed to generate rst file in partially deleted structure (Thu Mar 10 2022 - 10:46:08 PST)
- [AMBER] Failed to generate rst file in partially deleted structure (Mon Mar 07 2022 - 14:44:57 PST)
Állan Ferrari
- Re: [AMBER] Error: an illegal memory access was encountered launching kernel kClearForces (Tue Mar 01 2022 - 05:08:08 PST)
Пушкарев Сергей
- [AMBER] Tyrosine anion simulation (Mon Mar 28 2022 - 22:54:39 PDT)
Сергей Горелов
- Re: [AMBER] Cannot install AmberTools 21 due to errors in getline.c file (Mon Mar 21 2022 - 14:39:31 PDT)
- [AMBER] Cannot install AmberTools 21 due to errors in getline.c file (Sun Mar 20 2022 - 11:45:09 PDT)
云之彼端
- [AMBER] Is it possible to use less replicas by freezing some atoms of protein in which I'm not interested? (Fri Mar 25 2022 - 17:23:59 PDT)

Amber Archive Mar 2022 by author