On Mon, Mar 07, 2022, Bruno Cramer wrote:
>I am trying to install amber: /usr/local/amber20_src/build. *./run-cmake*
>goes fine. (using version AmberTools21.tar)
>When using *make install* I get error messages related to glibc as follows:
>............................
>[ 26%] Linking Fortran executable gbnsr6
>/usr/bin/ld: /lib/x86_64-linux-gnu/libmvec.so.1: undefined reference to
>`logf.GLIBC_2.27'
>/usr/bin/ld: /lib/x86_64-linux-gnu/libmvec.so.1: undefined reference to
>`log.GLIBC_2.29'
>*etc (more similar lines)*
>.......................
>Cheking my glibc version I get
>(base) bcramer.schrodinger:/usr/local/amber20_src/build$
>libc6 is already the newest version (2.31-0ubuntu9.7).
The fact that three different versions (2.27, 2.29 and 2.31) are referenced
is suspicious. What version of the compilers are you using? You might look
at the date of /lib/x86_64-linux-gnu/libmvec.so.1.
Also, save the output of the make invocation, e.g.
VERBOSE=1 make install | tee make.log
Are other Fortran files correctly linked before you get to gbnsr6? The
verbose flag will give the complete linking instructions that are failing,
which might also provide some clue.
....good luck...dac
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Received on Tue Mar 08 2022 - 05:30:02 PST
