Amber Archive Sep 2003 by subject
- AMBER: 'high' temp. simulation!!
- AMBER: 'ho' vDW parameters
- AMBER: ?small bugs? - 2nd suggestion
- AMBER: A problem about xleap
- AMBER: about the mopac7 installation.
- AMBER: Accuracy of PB solvation energy
- AMBER: altering mass in .top file
- AMBER: Amber 7 - bugfix 42 problem.
- AMBER: AMBER Carnal files
- AMBER: AMBER error in CHALANGE
- AMBER: AMBER on LINUX ?? (fwd)
- AMBER: AMBER quasih question(s)
- AMBER: Antechamber problem
- AMBER: atomic clash or structure size?
- AMBER: Benchmark of AMBER on Apple G5 machine
- AMBER: C-alpha RMS
- AMBER: Calculating solvation energies for MM-PBSA use
- AMBER: Carnal Input file
- AMBER: cd-c-os and c3-cd-c angle parameters
- AMBER: charge definition
- AMBER: charge of IRON in HEME!!
- AMBER: Compiling 64-bit version on AIX
- AMBER: Compiling sander with single precision
- AMBER: density equilibrium & harmonic restrain
- AMBER: dielectric constant for blends
- AMBER: DMSO box
- AMBER: DNA helix is not in z-direction
- AMBER: double bonds in prmtop
- AMBER: error message is the same after I added a title
- AMBER: EWALD BOMB and solvent density problem
- AMBER: FEP problem
- AMBER: FF parameters for BOC - group
- AMBER: following salt and waterbridges during a simulation
- AMBER: gaff parameters
- AMBER: Generalized Born parameters
- AMBER: GLYCAM/AMBER Configurator
- AMBER: GROUP
- AMBER: How can I set ntx=7, but exclude the velocity?
- AMBER: iam a newbie !!!
- AMBER: IG value
- AMBER: improper
- AMBER: increase size of NATOM or NRES for "ambpdb"
- AMBER: leap/frcmod problem
- AMBER: MD problem!
- AMBER: MD problem!!
- AMBER: MD simulations on small molecules immersed in sparse water shell
- AMBER: MeCNBOX
- AMBER: mfef90 - installation problem
- AMBER: minimization error
- AMBER: MIPS R14000 and Machine-file
- AMBER: mm_pbsa - ?small bugs?
- AMBER: MM_PBSA(GBSA) Examples
- AMBER: NaCl ion pairs in TIP3P water box
- AMBER: no defined type for atom N atom
- AMBER: non-bonded cutoffs
- AMBER: nstlim
- AMBER: Online model of 2C9
- AMBER: pair-cutoff
- AMBER: parm. and top. for sugars, charmm?
- AMBER: performance vs number of processors
- AMBER: Phase for torsion angle different of 0 or 180 ?
- AMBER: plane angle.
- AMBER: PMEMD 3.03 Update available
- AMBER: PMEMD: dual XEON vs SGI cluster
- AMBER: PMF calculations
- AMBER: PMF ethane example: Can someone correct the INPUT? Thanks.
- AMBER: polarizability and PME
- AMBER: problem with file format
- AMBER: problems with periodic boundary conditions
- AMBER: processors
- AMBER: ptraj question
- AMBER: radial distribution-function by Ptraj
- AMBER: reporting atoms clashed during simple energy minimization
- AMBER: residues and molecules
- AMBER: sander on cygwin
- AMBER: Scyld cluster amber 7 compile problems
- AMBER: SHAKE poblem with dummy atoms
- AMBER: slow simulation
- AMBER: slower simulation
- AMBER: Slower simulation and pair-range cutoff?
- AMBER: solvatebox-solvateshell
- AMBER: Suggestion regarding long simulation.
- AMBER: surften value in mm_gbsa/mm_pbsa calculations
- AMBER: TIP5P
- AMBER: TTF parameters
- AMBER: update to answer about solvateShell
- AMBER: Using NWCHEM for esp?
- AMBER: what can't I use ibelly?
- AMBER: xLEAP Problem
- AMBER: Zn in antechamber
- MD problem!!
- MeCNBOX
- Residual dipolar couplings
- torsional energy
- xLEAP Problem
- Last message date: Tue Sep 30 2003 - 21:53:01 PDT
- Archived on: Wed Oct 09 2024 - 05:53:22 PDT
