Re: AMBER: performance vs number of processors

From: David A. Case <>
Date: Mon, 15 Sep 2003 12:53:32 -0700

On Mon, Sep 15, 2003, GUILLERMINA L ESTIU wrote:
> I am running amber7 in the pittsburg supercomputer center. (HP Alphaserver
> Cluster comprising 750 4-processor compute nodes) Does anyone have previous
> experience on the best performance of sander (amber7) vs number of
> processors?

There are some benchmark numbers for the "lemieux" machine at the Amber web
site:; you can also check

for others. Don't know if this is what you need or not....


David A. Case                     |  e-mail:
Dept. of Molecular Biology, TPC15 |  fax:          +1-858-784-8896
The Scripps Research Institute    |  phone:        +1-858-784-9768
10550 N. Torrey Pines Rd.         |  home page:                   
La Jolla CA 92037  USA            |
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Received on Mon Sep 15 2003 - 21:53:01 PDT
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