you can use ptraj or carnal. there are scripts in the manual.
Do Anh Tuan <datuan.hcmuns.edu.vn> wrote:Dear Amber users
I am a new Amber user and running MD simulation for a protein (259 residues).
But I don't know how to create C-alpha RMSD report to analyze the output
results (ex: crd file). Can anybody help me on this?
Thanks in advance,
Do Anh Tuan
----------
Collaborative Bioinformatics Lab.
Laboratory of Molecular Biotechnology
University of Natural Sciences, VNU - HCMC
Add: 227 Nguyen Van Cu St., Dist. 5, HCMC, Vietnam
e-mail: datuan.hcmuns.edu.vn
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Received on Mon Sep 22 2003 - 14:53:01 PDT
