AMBER: non-bonded cutoffs

From: Michael Dolan <>
Date: Fri, 26 Sep 2003 10:17:16 -0500

When a user specifies a non-bonded cutoff of 8.0A around an atom in a
protein, are a) only atoms within the 8.0A radius included in the
calculation, or b) atoms within 8.0A plus those atoms which are part of
a residue having at least one atom within the 8.0A included?



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Received on Fri Sep 26 2003 - 16:53:01 PDT
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