AMBER: reporting atoms clashed during simple energy minimization

From: <>
Date: Tue, 9 Sep 2003 18:19:36 +0800 (CST)


I use sander for simple energy minimization (without molecular dynamic
Is there any method that can report the atoms clashed during the
For example, if the distance of the non-bonded atoms is less than 1.5
A, it can report the warning.


Jackie Chen

The AMBER Mail Reflector
To post, send mail to
To unsubscribe, send "unsubscribe amber" to
Received on Tue Sep 09 2003 - 11:53:05 PDT
Custom Search