Amber Archive Apr 2001: by subject

(no subject)
- Bill Ross (Mon Apr 02 2001 - 09:51:45 PDT)
- Michal Otyepka (Mon Apr 02 2001 - 02:33:38 PDT)
1-4 nonbonded interactions
- Bill Ross (Wed Apr 18 2001 - 12:58:59 PDT)
- David L. Bostick (Wed Apr 18 2001 - 11:37:12 PDT)
about dials_and_windows
- Guanglei Cui (Mon Apr 02 2001 - 06:34:24 PDT)
- thenmalar rathinavelan (Mon Apr 02 2001 - 05:13:41 PDT)
- thenmalar rathinavelan (Mon Apr 02 2001 - 05:13:41 PDT)
about OWFEG
- nicolas baurin (Mon Apr 02 2001 - 02:36:11 PDT)
about Owfeg in Amber 6.0
- Craig Marhefka (Mon Apr 02 2001 - 06:19:18 PDT)
about plevel in sander 6
- Shixiang Yan (Fri Apr 27 2001 - 15:32:48 PDT)
Amber 6 on parallel SUN
- Christian Pilger (Thu Apr 19 2001 - 02:47:02 PDT)
AMBER 6 on PME
- Jarrod Smith (Fri Apr 06 2001 - 11:07:57 PDT)
- Didier Rognan (Fri Apr 06 2001 - 09:41:19 PDT)
AMBER on LINUX
- Osvaldo Andrade Santos Filho (Wed Apr 25 2001 - 12:30:05 PDT)
amber-request.cgl.ucsf.edu
- k. vengadesan (Sat Apr 21 2001 - 19:57:24 PDT)
AMBER6 on Alphas40
- Sanjeev B.S. (Sat Apr 28 2001 - 01:06:22 PDT)
AMBER6 on Alphas40 (fwd)
- Thomas Cheatham (Mon Apr 30 2001 - 10:05:37 PDT)
- Michael Crowley (Mon Apr 30 2001 - 09:35:36 PDT)
- Jarrod Smith (Mon Apr 30 2001 - 09:11:34 PDT)
- Sanjeev B.S. (Mon Apr 30 2001 - 00:31:14 PDT)
AMBER6/PME on Origin 2000
- Didier Rognan (Fri Apr 06 2001 - 04:43:43 PDT)
applying atom types
- Bill Ross (Fri Apr 27 2001 - 10:24:19 PDT)
ask help
- Yang Tom (Sun Apr 08 2001 - 00:40:01 PDT)
atom types for xleap
- Bill Ross (Tue Apr 17 2001 - 11:23:37 PDT)
- Marcela Madrid (Tue Apr 17 2001 - 09:08:59 PDT)
Blowup problem
- txyang (Thu Apr 05 2001 - 00:12:45 PDT)
Box info after minimization
- Troy Bothwell (Wed Apr 04 2001 - 20:38:58 PDT)
Ca2+ parameters and how ? ...
- Bill Ross (Mon Apr 02 2001 - 15:54:54 PDT)
- A. Ababou (Mon Apr 02 2001 - 12:46:27 PDT)
Compilation problem of AMBER6.0!
- Stephane (Tue Apr 17 2001 - 02:46:44 PDT)
- Carlos Simmerling (Mon Apr 16 2001 - 07:01:06 PDT)
- Ireena Bagai (Mon Apr 16 2001 - 05:24:25 PDT)
create a parm.top file
- Pascal Bonnet (Tue Apr 24 2001 - 10:18:51 PDT)
creating a restrt file from frames of mdcrd and mdvel
- Jake Isaacs (Wed Apr 04 2001 - 07:31:35 PDT)
Delphi Calculations
- Guanglei Cui (Tue Apr 10 2001 - 12:15:01 PDT)
electrostatic point charge
- Olga Carvalho (Mon Apr 09 2001 - 07:45:19 PDT)
Essential dynamics
- David Bevan (Thu Apr 26 2001 - 04:18:25 PDT)
Following Coordinates
- Bill Ross (Wed Apr 04 2001 - 17:24:54 PDT)
- Troy Bothwell (Wed Apr 04 2001 - 16:23:16 PDT)
GB and Ions
- Andreas Svrcek-Seiler (Mon Apr 09 2001 - 03:21:06 PDT)
How to let IBELLY and NTR both on?
- Svetlana Nolde (Wed Apr 25 2001 - 02:55:32 PDT)
- Hai Long (Tue Apr 24 2001 - 09:10:49 PDT)
internal variables in ptraj
- Therese Malliavin (Tue Apr 10 2001 - 01:29:44 PDT)
isotropic scaling of coordinates during MD
- Giulio Rastelli (Sat Apr 14 2001 - 04:35:48 PDT)
ISTAR2 and 64-bit sander
- jim caldwell (Wed Apr 18 2001 - 13:26:42 PDT)
- Jarrod Smith (Wed Apr 18 2001 - 12:20:05 PDT)
minimization
- Andrew Aird (Tue Apr 10 2001 - 09:05:27 PDT)
Model(l)ing 2001 in Erlangen/Germany: Speaker list
- Harald Lanig (Mon Apr 23 2001 - 05:59:29 PDT)
N-terminal and C-terminal hydrogens
- Michael Cooney (Thu Apr 12 2001 - 13:55:06 PDT)
- Troy Bothwell (Thu Apr 12 2001 - 11:10:16 PDT)
OCCO in parm99
- Peter Varnai (Wed Apr 04 2001 - 01:52:32 PDT)
odd display of ambpdb generated files
- David Case (Tue Apr 17 2001 - 12:33:16 PDT)
- Bill Ross (Tue Apr 17 2001 - 12:22:19 PDT)
- Mihaly Mezei (Tue Apr 17 2001 - 12:18:03 PDT)
- Bill Ross (Tue Apr 17 2001 - 11:20:18 PDT)
- Michael Cooney (Tue Apr 17 2001 - 09:56:36 PDT)
- David Case (Tue Apr 17 2001 - 09:27:19 PDT)
- Mark Forster (Tue Apr 17 2001 - 08:58:49 PDT)
- Bill Ross (Tue Apr 17 2001 - 08:42:26 PDT)
- Richard W Dixon (Tue Apr 17 2001 - 06:26:45 PDT)
- Elsa Sousa Henriques (Mon Apr 16 2001 - 10:49:03 PDT)
- Troy Bothwell (Fri Apr 13 2001 - 17:02:26 PDT)
- Bill Ross (Fri Apr 13 2001 - 15:12:45 PDT)
- Jake Isaacs (Fri Apr 13 2001 - 13:20:39 PDT)
opinions on supercomputer platforms
- Nathalie Godbout (Fri Apr 06 2001 - 12:57:37 PDT)
Pairlist error
- jim caldwell (Tue Apr 03 2001 - 21:44:54 PDT)
- Bill Ross (Tue Apr 03 2001 - 21:23:29 PDT)
- Troy Bothwell (Tue Apr 03 2001 - 20:20:35 PDT)
pressure with polarizable potentials
- jim caldwell (Mon Apr 02 2001 - 14:51:10 PDT)
- Pavel Jungwirth (Mon Apr 02 2001 - 07:21:26 PDT)
Problem in adding solvent other than water ...
- Mausumi Mazumdar (Wed Apr 18 2001 - 21:56:42 PDT)
problem with carnal on linux
- Riccardo Nifosi (Mon Apr 23 2001 - 08:03:40 PDT)
Problem, setting up AMBERHOME!
- jim caldwell (Tue Apr 24 2001 - 08:04:42 PDT)
- Andrea Bernini (Tue Apr 24 2001 - 07:08:08 PDT)
- Thomas A. Spraggins (Tue Apr 24 2001 - 05:23:48 PDT)
- Ireena Bagai (Tue Apr 24 2001 - 03:42:04 PDT)
producing a post-ptraj prmtop
- Peter Varnai (Wed Apr 04 2001 - 01:44:26 PDT)
- Guanglei Cui (Tue Apr 03 2001 - 18:13:27 PDT)
- R. M. Fesinmeyer (Tue Apr 03 2001 - 17:20:41 PDT)
ptraj correlation command
- Troy Bothwell (Sat Apr 21 2001 - 07:23:40 PDT)
RDF figure
- txyang (Fri Apr 06 2001 - 00:19:20 PDT)
Request.
- hparikh (Tue Apr 24 2001 - 14:12:52 PDT)
sander compilers
- David Konerding (Mon Apr 09 2001 - 09:13:23 PDT)
- Andrew Petersen (Mon Apr 09 2001 - 07:21:55 PDT)
sander crash / linux cluster
- C. Klein (Mon Apr 30 2001 - 08:06:58 PDT)
Sander minimization
- kian kani (Tue Apr 24 2001 - 18:50:44 PDT)
sander on SP3
- Sanjeev B.S. (Tue Apr 24 2001 - 14:59:16 PDT)
sander_classic: bellyrun with constraints
- nicolas baurin (Thu Apr 05 2001 - 00:12:51 PDT)
- nicolas baurin (Wed Apr 04 2001 - 11:13:21 PDT)
saving a trajectory as individual pdb files
- Jarrod Smith (Mon Apr 02 2001 - 15:39:15 PDT)
- Bill Ross (Mon Apr 02 2001 - 15:29:07 PDT)
- Guanglei Cui (Mon Apr 02 2001 - 15:23:51 PDT)
- Jake Isaacs (Mon Apr 02 2001 - 14:42:38 PDT)
setting random velocities
- Svetlana Nolde (Mon Apr 02 2001 - 09:17:01 PDT)
special belly minimization
- Didier Rognan (Wed Apr 25 2001 - 03:40:51 PDT)
structure verification
- Christian Pilger (Thu Apr 05 2001 - 06:22:29 PDT)
terminal base pair opening
- Bill Ross (Mon Apr 02 2001 - 10:18:38 PDT)
- Guanglei Cui (Mon Apr 02 2001 - 06:27:19 PDT)
- Peter Varnai (Mon Apr 02 2001 - 05:19:54 PDT)
terminal base pair opening 2
- Peter Varnai (Mon Apr 02 2001 - 06:46:06 PDT)
test run
- Sanjeev B.S. (Sat Apr 21 2001 - 14:24:25 PDT)
Test run for gb_rna on AMBER6 (IBM SP3)
- Sanjeev B.S. (Thu Apr 19 2001 - 12:54:57 PDT)
TIP3P/SPC VdW radius
- Mihaly Mezei (Tue Apr 10 2001 - 14:01:35 PDT)
- Jung-Hsing Lin (Tue Apr 10 2001 - 13:43:52 PDT)
- Thomas Huber (Tue Apr 10 2001 - 13:02:43 PDT)
- artem (Tue Apr 10 2001 - 09:00:18 PDT)
tleap but no xleap on IBM SP3
- Sanjeev B.S. (Fri Apr 20 2001 - 07:44:04 PDT)
water density and rdf calculations
- thenmalar rathinavelan (Wed Apr 11 2001 - 03:02:59 PDT)
Where to Start working in AMBER from?
- Ireena Bagai (Fri Apr 20 2001 - 06:07:23 PDT)
Windows version of AMBER?
- Ostlund, Neil S. (Tue Apr 17 2001 - 10:04:04 PDT)
- Stan (Mon Apr 16 2001 - 23:59:44 PDT)

Amber Archive Apr 2001 by subject