Jake,
Do you get the same multiple bonds if you view the .pdb in Rasmol? I have
this problem also and I think it is because the programs connect by distance
between atoms. To solve this I do a short (~500 step) minimization to
optimize strained bond distances. However, this may alter your structure in
a way that is unacceptable.
Troy
-----Original Message-----
From: Jake Isaacs [mailto:rjisaa0_at_pop.uky.edu]
Sent: Friday, April 13, 2001 1:21 PM
To: AMBER list
Subject: odd display of ambpdb generated files
When I use InsightII to view a pdb file created from prmtop and inpcrd via
ambpdb, multiple anomalous bonds appear. What might be the cause and
solution for this?
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Received on Fri Apr 13 2001 - 17:02:26 PDT
