Amber Archive Apr 2001: by author

A. Ababou
- Ca2+ parameters and how ? ... (Mon Apr 02 2001 - 12:46:27 PDT)
Andrea Bernini
- Re: Problem, setting up AMBERHOME! (Tue Apr 24 2001 - 07:08:08 PDT)
Andreas Svrcek-Seiler
- GB and Ions (Mon Apr 09 2001 - 03:21:06 PDT)
Andrew Aird
- minimization (Tue Apr 10 2001 - 09:05:27 PDT)
Andrew Petersen
- sander compilers (Mon Apr 09 2001 - 07:21:55 PDT)
artem
- TIP3P/SPC VdW radius (Tue Apr 10 2001 - 09:00:18 PDT)
Bill Ross
- Re: applying atom types (Fri Apr 27 2001 - 10:24:19 PDT)
- Re: 1-4 nonbonded interactions (Wed Apr 18 2001 - 12:58:59 PDT)
- Re: odd display of ambpdb generated files (Tue Apr 17 2001 - 12:22:19 PDT)
- Re: atom types for xleap (Tue Apr 17 2001 - 11:23:37 PDT)
- Re: odd display of ambpdb generated files (Tue Apr 17 2001 - 11:20:18 PDT)
- Re: odd display of ambpdb generated files (Tue Apr 17 2001 - 08:42:26 PDT)
- Re: odd display of ambpdb generated files (Fri Apr 13 2001 - 15:12:45 PDT)
- Re: Following Coordinates (Wed Apr 04 2001 - 17:24:54 PDT)
- Re: Pairlist error (Tue Apr 03 2001 - 21:23:29 PDT)
- Re: Ca2+ parameters and how ? ... (Mon Apr 02 2001 - 15:54:54 PDT)
- Re: saving a trajectory as individual pdb files (Mon Apr 02 2001 - 15:29:07 PDT)
- RE: terminal base pair opening (Mon Apr 02 2001 - 10:18:38 PDT)
- (no subject) (Mon Apr 02 2001 - 09:51:45 PDT)
C. Klein
- sander crash / linux cluster (Mon Apr 30 2001 - 08:06:58 PDT)
Carlos Simmerling
- Re: Compilation problem of AMBER6.0! (Mon Apr 16 2001 - 07:01:06 PDT)
Christian Pilger
- Amber 6 on parallel SUN (Thu Apr 19 2001 - 02:47:02 PDT)
- structure verification (Thu Apr 05 2001 - 06:22:29 PDT)
Craig Marhefka
- FW: about Owfeg in Amber 6.0 (Mon Apr 02 2001 - 06:19:18 PDT)
David Bevan
- Essential dynamics (Thu Apr 26 2001 - 04:18:25 PDT)
David Case
- Re: odd display of ambpdb generated files (Tue Apr 17 2001 - 12:33:16 PDT)
- Re: odd display of ambpdb generated files (Tue Apr 17 2001 - 09:27:19 PDT)
David Konerding
- Re: sander compilers (Mon Apr 09 2001 - 09:13:23 PDT)
David L. Bostick
- 1-4 nonbonded interactions (Wed Apr 18 2001 - 11:37:12 PDT)
Didier Rognan
- special belly minimization (Wed Apr 25 2001 - 03:40:51 PDT)
- AMBER 6 on PME (Fri Apr 06 2001 - 09:41:19 PDT)
- AMBER6/PME on Origin 2000 (Fri Apr 06 2001 - 04:43:43 PDT)
Elsa Sousa Henriques
- Re: odd display of ambpdb generated files (Mon Apr 16 2001 - 10:49:03 PDT)
Giulio Rastelli
- isotropic scaling of coordinates during MD (Sat Apr 14 2001 - 04:35:48 PDT)
Guanglei Cui
- Delphi Calculations (Tue Apr 10 2001 - 12:15:01 PDT)
- RE: producing a post-ptraj prmtop (Tue Apr 03 2001 - 18:13:27 PDT)
- RE: saving a trajectory as individual pdb files (Mon Apr 02 2001 - 15:23:51 PDT)
- RE: about dials_and_windows (Mon Apr 02 2001 - 06:34:24 PDT)
- RE: terminal base pair opening (Mon Apr 02 2001 - 06:27:19 PDT)
Hai Long
- How to let IBELLY and NTR both on? (Tue Apr 24 2001 - 09:10:49 PDT)
Harald Lanig
- Model(l)ing 2001 in Erlangen/Germany: Speaker list (Mon Apr 23 2001 - 05:59:29 PDT)
hparikh
- Request. (Tue Apr 24 2001 - 14:12:52 PDT)
Ireena Bagai
- Problem, setting up AMBERHOME! (Tue Apr 24 2001 - 03:42:04 PDT)
- Where to Start working in AMBER from? (Fri Apr 20 2001 - 06:07:23 PDT)
- Compilation problem of AMBER6.0! (Mon Apr 16 2001 - 05:24:25 PDT)
Jake Isaacs
- odd display of ambpdb generated files (Fri Apr 13 2001 - 13:20:39 PDT)
- creating a restrt file from frames of mdcrd and mdvel (Wed Apr 04 2001 - 07:31:35 PDT)
- saving a trajectory as individual pdb files (Mon Apr 02 2001 - 14:42:38 PDT)
Jarrod Smith
- Re: AMBER6 on Alphas40 (fwd) (Mon Apr 30 2001 - 09:11:34 PDT)
- ISTAR2 and 64-bit sander (Wed Apr 18 2001 - 12:20:05 PDT)
- Re: AMBER 6 on PME (Fri Apr 06 2001 - 11:07:57 PDT)
- Re: saving a trajectory as individual pdb files (Mon Apr 02 2001 - 15:39:15 PDT)
jim caldwell
- Re: Problem, setting up AMBERHOME! (Tue Apr 24 2001 - 08:04:42 PDT)
- Re: ISTAR2 and 64-bit sander (Wed Apr 18 2001 - 13:26:42 PDT)
- Re: Pairlist error (Tue Apr 03 2001 - 21:44:54 PDT)
- Re: pressure with polarizable potentials (Mon Apr 02 2001 - 14:51:10 PDT)
Jung-Hsing Lin
- Re: TIP3P/SPC VdW radius (Tue Apr 10 2001 - 13:43:52 PDT)
k. vengadesan
- amber-request.cgl.ucsf.edu (Sat Apr 21 2001 - 19:57:24 PDT)
kian kani
- Sander minimization (Tue Apr 24 2001 - 18:50:44 PDT)
Marcela Madrid
- atom types for xleap (Tue Apr 17 2001 - 09:08:59 PDT)
Mark Forster
- Re: odd display of ambpdb generated files (Tue Apr 17 2001 - 08:58:49 PDT)
Mausumi Mazumdar
- Problem in adding solvent other than water ... (Wed Apr 18 2001 - 21:56:42 PDT)
Michael Cooney
- Re: odd display of ambpdb generated files (Tue Apr 17 2001 - 09:56:36 PDT)
- Re: N-terminal and C-terminal hydrogens (Thu Apr 12 2001 - 13:55:06 PDT)
Michael Crowley
- Re: AMBER6 on Alphas40 (fwd) (Mon Apr 30 2001 - 09:35:36 PDT)
Michal Otyepka
- (no subject) (Mon Apr 02 2001 - 02:33:38 PDT)
Mihaly Mezei
- Re: odd display of ambpdb generated files (Tue Apr 17 2001 - 12:18:03 PDT)
- Re: TIP3P/SPC VdW radius (Tue Apr 10 2001 - 14:01:35 PDT)
Nathalie Godbout
- Re: opinions on supercomputer platforms (Fri Apr 06 2001 - 12:57:37 PDT)
nicolas baurin
- Re: sander_classic: bellyrun with constraints (Thu Apr 05 2001 - 00:12:51 PDT)
- sander_classic: bellyrun with constraints (Wed Apr 04 2001 - 11:13:21 PDT)
- about OWFEG (Mon Apr 02 2001 - 02:36:11 PDT)
Olga Carvalho
- electrostatic point charge (Mon Apr 09 2001 - 07:45:19 PDT)
Ostlund, Neil S.
- RE: Windows version of AMBER? (Tue Apr 17 2001 - 10:04:04 PDT)
Osvaldo Andrade Santos Filho
- AMBER on LINUX (Wed Apr 25 2001 - 12:30:05 PDT)
Pascal Bonnet
- create a parm.top file (Tue Apr 24 2001 - 10:18:51 PDT)
Pavel Jungwirth
- pressure with polarizable potentials (Mon Apr 02 2001 - 07:21:26 PDT)
Peter Varnai
- OCCO in parm99 (Wed Apr 04 2001 - 01:52:32 PDT)
- Re: producing a post-ptraj prmtop (Wed Apr 04 2001 - 01:44:26 PDT)
- terminal base pair opening 2 (Mon Apr 02 2001 - 06:46:06 PDT)
- terminal base pair opening (Mon Apr 02 2001 - 05:19:54 PDT)
R. M. Fesinmeyer
- producing a post-ptraj prmtop (Tue Apr 03 2001 - 17:20:41 PDT)
Riccardo Nifosi
- problem with carnal on linux (Mon Apr 23 2001 - 08:03:40 PDT)
Richard W Dixon
- Re: odd display of ambpdb generated files (Tue Apr 17 2001 - 06:26:45 PDT)
Sanjeev B.S.
- Re: AMBER6 on Alphas40 (fwd) (Mon Apr 30 2001 - 00:31:14 PDT)
- AMBER6 on Alphas40 (Sat Apr 28 2001 - 01:06:22 PDT)
- sander on SP3 (Tue Apr 24 2001 - 14:59:16 PDT)
- test run (Sat Apr 21 2001 - 14:24:25 PDT)
- tleap but no xleap on IBM SP3 (Fri Apr 20 2001 - 07:44:04 PDT)
- Test run for gb_rna on AMBER6 (IBM SP3) (Thu Apr 19 2001 - 12:54:57 PDT)
Shixiang Yan
- about plevel in sander 6 (Fri Apr 27 2001 - 15:32:48 PDT)
Stan
- Windows version of AMBER? (Mon Apr 16 2001 - 23:59:44 PDT)
Stephane
- Re: Compilation problem of AMBER6.0! (Tue Apr 17 2001 - 02:46:44 PDT)
Svetlana Nolde
- Re: How to let IBELLY and NTR both on? (Wed Apr 25 2001 - 02:55:32 PDT)
- setting random velocities (Mon Apr 02 2001 - 09:17:01 PDT)
thenmalar rathinavelan
- water density and rdf calculations (Wed Apr 11 2001 - 03:02:59 PDT)
- about dials_and_windows (Mon Apr 02 2001 - 05:13:41 PDT)
- about dials_and_windows (Mon Apr 02 2001 - 05:13:41 PDT)
Therese Malliavin
- internal variables in ptraj (Tue Apr 10 2001 - 01:29:44 PDT)
Thomas A. Spraggins
- RE: Problem, setting up AMBERHOME! (Tue Apr 24 2001 - 05:23:48 PDT)
Thomas Cheatham
- Re: AMBER6 on Alphas40 (fwd) (Mon Apr 30 2001 - 10:05:37 PDT)
Thomas Huber
- Re: TIP3P/SPC VdW radius (Tue Apr 10 2001 - 13:02:43 PDT)
Troy Bothwell
- ptraj correlation command (Sat Apr 21 2001 - 07:23:40 PDT)
- RE: odd display of ambpdb generated files (Fri Apr 13 2001 - 17:02:26 PDT)
- N-terminal and C-terminal hydrogens (Thu Apr 12 2001 - 11:10:16 PDT)
- Box info after minimization (Wed Apr 04 2001 - 20:38:58 PDT)
- Following Coordinates (Wed Apr 04 2001 - 16:23:16 PDT)
- Pairlist error (Tue Apr 03 2001 - 20:20:35 PDT)
txyang
- RDF figure (Fri Apr 06 2001 - 00:19:20 PDT)
- Blowup problem (Thu Apr 05 2001 - 00:12:45 PDT)
Yang Tom
- ask help (Sun Apr 08 2001 - 00:40:01 PDT)

Amber Archive Apr 2001 by author