Amber Archive Mar 2006 By Thread
- Re: AMBER: How to develop charge for my deprotonated glycine FyD (Tue Feb 28 2006 - 21:00:37 PST)
- Re: AMBER: How to develop charge for my deprotonated glycine Jianzhong Liu (Fri Mar 03 2006 - 11:05:41 PST)
- Re: AMBER: How to develop charge for my deprotonated glycine FyD (Sat Mar 04 2006 - 01:26:13 PST)
- Re: AMBER: How to develop charge for my deprotonated glycine Jianzhong Liu (Sat Mar 04 2006 - 19:05:12 PST)
- Re: AMBER: How to develop charge for my deprotonated glycine FyD (Sat Mar 04 2006 - 01:26:13 PST)
- Re: AMBER: How to develop charge for my deprotonated glycine Jianzhong Liu (Fri Mar 03 2006 - 11:05:41 PST)
- AMBER: install error biolabadmin.ibt.lt (Wed Mar 01 2006 - 03:13:12 PST)
- RE: AMBER: install error Ross Walker (Wed Mar 01 2006 - 08:08:24 PST)
- Re: AMBER: install error biolabadmin.ibt.lt (Thu Mar 02 2006 - 04:48:17 PST)
- AMBER: transition metals and the parmcal of the antechamber module Cenk Andac (Thu Mar 02 2006 - 03:09:44 PST)
- Re: AMBER: install error Mark Williamson (Thu Mar 02 2006 - 03:13:40 PST)
- Re: AMBER: install error biolabadmin.ibt.lt (Fri Mar 03 2006 - 01:47:11 PST)
- Re: AMBER: install error biolabadmin.ibt.lt (Thu Mar 02 2006 - 04:48:17 PST)
- RE: AMBER: install error Ross Walker (Wed Mar 01 2006 - 08:08:24 PST)
- AMBER: Nmode vs QM Freq Calculation Mark Williamson (Wed Mar 01 2006 - 03:28:57 PST)
- Re: AMBER: Nmode vs QM Freq Calculation David A. Case (Wed Mar 01 2006 - 10:54:12 PST)
- AMBER: leap: syntax error when use source command Dmitry Osolodkin (Wed Mar 01 2006 - 04:27:47 PST)
- RE:AMBER: leap: syntax error when use source command Kateryna Miroshnychenko (Wed Mar 01 2006 - 04:58:22 PST)
- AMBER: replica exchange hangs Peter Varnai (Wed Mar 01 2006 - 09:29:34 PST)
- Re: AMBER: replica exchange hangs Sergey Krishtal (Wed Mar 01 2006 - 10:15:46 PST)
- Re: AMBER: replica exchange hangs Carlos Simmerling (Wed Mar 01 2006 - 10:37:04 PST)
- Re: AMBER: replica exchange hangs Peter Varnai (Wed Mar 01 2006 - 10:56:21 PST)
- Re: AMBER: replica exchange hangs Carlos Simmerling (Wed Mar 01 2006 - 10:37:04 PST)
- Re: AMBER: replica exchange hangs Carlos Simmerling (Wed Mar 01 2006 - 10:37:40 PST)
- Re: AMBER: replica exchange hangs Sergey Krishtal (Wed Mar 01 2006 - 10:15:46 PST)
- Re: AMBER: failed to save prm and xyz using ff96 Joseph Nachman (Wed Mar 01 2006 - 12:51:09 PST)
- Re: AMBER: failed to save prm and xyz using ff96 Viktor Hornak (Wed Mar 01 2006 - 13:16:13 PST)
- Re: AMBER: failed to save prm and xyz using ff96 Joseph Nachman (Wed Mar 01 2006 - 15:29:18 PST)
- Re: AMBER: failed to save prm and xyz using ff96 Viktor Hornak (Wed Mar 01 2006 - 13:16:13 PST)
- AMBER: GAFF + AM1BCC & small-molecule aggregation Scott P Brown (Wed Mar 01 2006 - 12:00:33 PST)
- Re: AMBER: GAFF + AM1BCC & small-molecule aggregation Thomas E. Cheatham, III (Wed Mar 01 2006 - 13:17:35 PST)
- Re: AMBER: GAFF + AM1BCC & small-molecule aggregation Carlos Simmerling (Wed Mar 01 2006 - 13:34:06 PST)
- Re: AMBER: GAFF + AM1BCC & small-molecule aggregation Carlos Simmerling (Wed Mar 01 2006 - 14:00:40 PST)
- Re: AMBER: GAFF + AM1BCC & small-molecule aggregation Carlos Simmerling (Wed Mar 01 2006 - 13:34:06 PST)
- Re: AMBER: GAFF + AM1BCC & small-molecule aggregation Thomas E. Cheatham, III (Wed Mar 01 2006 - 13:17:35 PST)
- AMBER: N-H and C-H Residual Dipolar Coupling thenmalar (Wed Mar 01 2006 - 14:01:52 PST)
- Re: AMBER: N-H and C-H Residual Dipolar Coupling David A. Case (Wed Mar 01 2006 - 14:38:09 PST)
- Re: AMBER: N-H and C-H Residual Dipolar Coupling thenmalar (Wed Mar 01 2006 - 16:59:34 PST)
- Re: AMBER: N-H and C-H Residual Dipolar Coupling David A. Case (Wed Mar 01 2006 - 14:38:09 PST)
- AMBER: Amber 9. Sergey Krishtal (Wed Mar 01 2006 - 19:37:02 PST)
- AMBER: G95, SGI and Amber8 Cenk Andac (Thu Mar 02 2006 - 23:30:44 PST)
- Re: AMBER: Amber 9. David A. Case (Fri Mar 03 2006 - 09:29:25 PST)
- AMBER: Which PTRAJ distribution to use? Chng Choon-Peng (Wed Mar 01 2006 - 23:30:49 PST)
- Re: AMBER: Which PTRAJ distribution to use? Thomas Cheatham (Thu Mar 02 2006 - 15:47:51 PST)
- Re: AMBER: Which PTRAJ distribution to use? Chng Choon-Peng (Thu Mar 02 2006 - 16:27:15 PST)
- Re: AMBER: Which PTRAJ distribution to use? Thomas Cheatham (Thu Mar 02 2006 - 15:47:51 PST)
- AMBER: amber8 and gfortran 4.1.0 Tru Huynh (Thu Mar 02 2006 - 08:00:00 PST)
- RE: AMBER: amber8 and gfortran 4.1.0 Ross Walker (Thu Mar 02 2006 - 08:17:49 PST)
- Re: AMBER: amber8 and gfortran 4.1.0 Tru Huynh (Thu Mar 02 2006 - 09:57:59 PST)
- Re: AMBER: amber8 and gfortran 4.1.0 David A. Case (Thu Mar 02 2006 - 10:07:05 PST)
- Re: AMBER: amber8 and gfortran 4.1.0 Tru Huynh (Thu Mar 02 2006 - 09:57:59 PST)
- Re: AMBER: amber8 and gfortran 4.1.0 Andreas Svrcek-Seiler (Thu Mar 02 2006 - 08:35:16 PST)
- Re: AMBER: amber8 and gfortran 4.1.0 Tru Huynh (Thu Mar 02 2006 - 09:55:10 PST)
- RE: AMBER: amber8 and gfortran 4.1.0 Ross Walker (Thu Mar 02 2006 - 08:17:49 PST)
- AMBER: AMBER 8 VS AMBER 7 venditti2.unisi.it (Thu Mar 02 2006 - 11:54:47 PST)
- Re: AMBER: AMBER 8 VS AMBER 7 David A. Case (Thu Mar 02 2006 - 12:42:39 PST)
- Re: AMBER: AMBER 8 VS AMBER 7 Carlos Simmerling (Thu Mar 02 2006 - 13:04:09 PST)
- Re: AMBER: AMBER 8 VS AMBER 7 David A. Case (Thu Mar 02 2006 - 12:42:39 PST)
- RE: AMBER: generating parameters for the NADH analogue H4NAD Simon Whitehead (Thu Mar 02 2006 - 15:17:50 PST)
- RE: AMBER: generating parameters for the NADH analogue H4NAD Ross Walker (Thu Mar 02 2006 - 15:32:27 PST)
- AMBER: about Br- parameters JAVIER PEREZ (Fri Mar 03 2006 - 02:18:23 PST)
- Re: AMBER: about Br- parameters Vitor Manuel Sousa F?x (Fri Mar 03 2006 - 02:28:40 PST)
- Re: AMBER: about Br- parameters Shulin Zhuang (Fri Mar 03 2006 - 03:04:27 PST)
- Re: AMBER: about Br- parameters Mathy Froeyen (Fri Mar 03 2006 - 06:38:42 PST)
- Re: AMBER: about Br- parameters Vitor Manuel Sousa F?x (Fri Mar 03 2006 - 06:48:24 PST)
- Re: AMBER: about Br- parameters german (Fri Mar 03 2006 - 02:52:50 PST)
- Re: AMBER: about Br- parameters Vitor Manuel Sousa F?x (Fri Mar 03 2006 - 02:28:40 PST)
- AMBER: from Wei Zhang: flight information Wei Zhang (Fri Mar 03 2006 - 10:45:59 PST)
- AMBER: sander restart problem Vlad Cojocaru (Sun Mar 05 2006 - 05:31:30 PST)
- Re: AMBER: sander restart problem Melinda Layten (Mon Mar 06 2006 - 09:35:01 PST)
- AMBER: charge neutralization with GB Manish Datt (Sun Mar 05 2006 - 09:27:34 PST)
- AMBER: ptraj:hbond question Yam (Sun Mar 05 2006 - 19:09:39 PST)
- AMBER: how to calculate the RMSD and B-factor for all atoms of residue haixiao jin (Mon Mar 06 2006 - 00:13:04 PST)
- Re: AMBER: how to calculate the RMSD and B-factor for all atoms of residue Chng Choon-Peng (Mon Mar 06 2006 - 00:51:13 PST)
- Re: AMBER: how to calculate the RMSD and B-factor for all atoms of residue haixiao jin (Tue Mar 07 2006 - 00:10:02 PST)
- Re: AMBER: how to calculate the RMSD and B-factor for all atoms of residue Chng Choon-Peng (Mon Mar 06 2006 - 00:51:13 PST)
- AMBER: the total energy is not converge as the cutoff increase thanyarat Udom (Mon Mar 06 2006 - 00:51:46 PST)
- Re: AMBER: the total energy is not converge as the cutoff increase Stefano Federico Massimiliano Pieraccini (Stefano.Pieraccini) (Mon Mar 06 2006 - 01:28:52 PST)
- Re: AMBER: the total energy is not converge as the cutoff increase Cenk Andac (Mon Mar 06 2006 - 05:28:04 PST)
- RE: AMBER: the total energy is not converge as the cutoff increase Ross Walker (Mon Mar 06 2006 - 07:39:51 PST)
- RE: AMBER: the total energy is not converge as the cutoff increase thanyarat Udom (Mon Mar 06 2006 - 23:17:23 PST)
- AMBER: How to patch the configure script (macosx) K. Yarem (Mon Mar 06 2006 - 07:40:58 PST)
- Re: AMBER: How to patch the configure script (macosx) David A. Case (Mon Mar 06 2006 - 10:25:16 PST)
- AMBER: Problem taking the PDB to the Amber coordinates for calculations Brian Stupi (Mon Mar 06 2006 - 15:17:22 PST)
- Re: AMBER: Problem taking the PDB to the Amber coordinates for calculations Ilyas Yildirim (Mon Mar 06 2006 - 15:42:29 PST)
- Re: AMBER: Problem taking the PDB to the Amber coordinates for calculations Thomas Cheatham (Mon Mar 06 2006 - 15:51:08 PST)
- Re: AMBER: Problem taking the PDB to the Amber coordinates for calculations Brian Stupi (Tue Mar 07 2006 - 11:30:59 PST)
- Re: AMBER: Problem taking the PDB to the Amber coordinates for calculations David A. Case (Tue Mar 07 2006 - 11:47:30 PST)
- Re: AMBER: Problem taking the PDB to the Amber coordinates for calculations Brian Stupi (Tue Mar 07 2006 - 11:55:13 PST)
- AMBER: Problem taking the PDB to the Amber coordinates for calculations Brian Stupi (Mon Mar 06 2006 - 15:17:22 PST)
- Re: AMBER: How to patch the configure script (macosx) David A. Case (Mon Mar 06 2006 - 10:25:16 PST)
- AMBER: Different results between serial and parallel runs in AMBER 8 Ilyas Yildirim (Mon Mar 06 2006 - 16:28:14 PST)
- Re: AMBER: Different results between serial and parallel runs in AMBER 8 Carlos Simmerling (Mon Mar 06 2006 - 16:33:14 PST)
- Re: AMBER: Different results between serial and parallel runs in AMBER 8 Ilyas Yildirim (Tue Mar 07 2006 - 05:45:01 PST)
- Re: AMBER: Different results between serial and parallel runs in AMBER 8 David A. Case (Tue Mar 07 2006 - 08:26:23 PST)
- AMBER: MD and MMPBSA alexandra.marques.fc.up.pt (Wed Mar 08 2006 - 20:29:23 PST)
- RE: AMBER: MD and MMPBSA Ross Walker (Wed Mar 08 2006 - 21:26:34 PST)
- Re: AMBER: Different results between serial and parallel runs in AMBER 8 Ilyas Yildirim (Tue Mar 07 2006 - 05:45:01 PST)
- Re: AMBER: Different results between serial and parallel runs in AMBER 8 David A. Case (Mon Mar 06 2006 - 18:05:31 PST)
- Re: AMBER: Different results between serial and parallel runs in AMBER 8 Ilyas Yildirim (Tue Mar 07 2006 - 04:51:14 PST)
- Re: AMBER: Different results between serial and parallel runs in AMBER 8 David A. Case (Tue Mar 07 2006 - 08:23:21 PST)
- Re: AMBER: Different results between serial and parallel runs in AMBER 8 Ilyas Yildirim (Tue Mar 07 2006 - 04:51:14 PST)
- Re: AMBER: Different results between serial and parallel runs in AMBER 8 Carlos Simmerling (Mon Mar 06 2006 - 16:33:14 PST)
- AMBER: rms processing A D (Mon Mar 06 2006 - 16:21:01 PST)
- Re: AMBER: rms processing Ilyas Yildirim (Mon Mar 06 2006 - 16:41:37 PST)
- Re: AMBER: rms processing Jianyin Shao (Mon Mar 20 2006 - 14:19:25 PST)
- AMBER: h bond analysis Claire Zerafa (Mon Mar 06 2006 - 21:39:52 PST)
- AMBER: Amber 8 under Solaris 9 compilation failed Dror (Mon Mar 06 2006 - 23:12:19 PST)
- Re: AMBER: Amber 8 under Solaris 9 compilation failed Scott Brozell (Sun Mar 26 2006 - 23:16:27 PST)
- AMBER: Amber 8 under Solaris 9 compilation failed Dror (Mon Mar 06 2006 - 23:03:03 PST)
- Re: AMBER: Amber 8 under Solaris 9 compilation failed David A. Case (Tue Mar 07 2006 - 08:35:35 PST)
- AMBER: ptraj: hbond analysis Yam (Tue Mar 07 2006 - 00:03:08 PST)
- AMBER: Trouble with combining a non-standard residue with a protein of standard residue Nitin Bhardwaj (Tue Mar 07 2006 - 13:21:44 PST)
- Re: AMBER: Trouble with combining a non-standard residue with a protein of standard residue FyD (Wed Mar 08 2006 - 21:37:07 PST)
- AMBER: question about solvatecap commander aini.umdnj.edu (Tue Mar 07 2006 - 18:46:41 PST)
- Re: AMBER: question about solvatecap commander mfyang (Tue Mar 07 2006 - 19:07:08 PST)
- Re: AMBER: question about solvatecap commander David A. Case (Tue Mar 07 2006 - 19:32:12 PST)
- AMBER:molsurf: molsurf.c:1057: is_buried: Assertion `sarg1 >= 0.0' failed snowyowls (Tue Mar 07 2006 - 23:18:02 PST)
- Re: AMBER:molsurf: molsurf.c:1057: is_buried: Assertion `sarg1 >= 0.0' failed David A. Case (Wed Mar 08 2006 - 08:46:55 PST)
- AMBER: NADP(H) parameters Simon Whitehead (Wed Mar 08 2006 - 02:06:45 PST)
- Re: AMBER: NADP(H) parameters David A. Case (Wed Mar 08 2006 - 08:26:04 PST)
- AMBER: Dror (Wed Mar 08 2006 - 02:09:28 PST)
- AMBER: converting .lib files Simon Whitehead (Wed Mar 08 2006 - 02:51:25 PST)
- Re: AMBER: converting .lib files David A. Case (Wed Mar 08 2006 - 08:06:38 PST)
- AMBER: Cosine content calculation matteo filandri (Wed Mar 08 2006 - 07:59:58 PST)
- Re: AMBER: Cosine content calculation David A. Case (Wed Mar 08 2006 - 12:09:54 PST)
- Re: AMBER: Cosine content calculation matteo filandri (Thu Mar 09 2006 - 02:01:20 PST)
- Re: AMBER: Cosine content calculation David A. Case (Thu Mar 09 2006 - 08:33:53 PST)
- Re: AMBER: Cosine content calculation Hannes Loeffler (Thu Mar 09 2006 - 17:02:48 PST)
- Re: AMBER: converting .lib files Bill Ross (Wed Mar 08 2006 - 08:30:17 PST)
- AMBER: modeling a non-standard molecule. Nitin Bhardwaj (Wed Mar 08 2006 - 13:02:50 PST)
- Re: AMBER: modeling a non-standard molecule. Bill Ross (Wed Mar 08 2006 - 13:47:50 PST)
- Re: AMBER: modeling a non-standard molecule. Bill Ross (Wed Mar 08 2006 - 13:19:21 PST)
- Re: AMBER: modeling a non-standard molecule. Nitin Bhardwaj (Wed Mar 08 2006 - 13:27:10 PST)
- AMBER: aligning polymer with Z-axis of periodic box Kenley Barrett (Wed Mar 08 2006 - 13:59:18 PST)
- Re: AMBER: aligning polymer with Z-axis of periodic box Ilyas Yildirim (Wed Mar 08 2006 - 14:54:22 PST)
- Re: AMBER: aligning polymer with Z-axis of periodic box Kenley Barrett (Wed Mar 08 2006 - 17:26:12 PST)
- Re: AMBER: aligning polymer with Z-axis of periodic box Ilyas Yildirim (Wed Mar 08 2006 - 14:54:22 PST)
- AMBER: bond parameters for positively charged guanidine group Ye Mei (Wed Mar 08 2006 - 18:54:15 PST)
- Re: AMBER: bond parameters for positively charged guanidine group Ilyas Yildirim (Wed Mar 08 2006 - 22:18:29 PST)
- Re: Re: AMBER: bond parameters for positively charged guanidine group Ye Mei (Wed Mar 08 2006 - 22:35:51 PST)
- Re: Re: AMBER: bond parameters for positively charged guanidine group Ilyas Yildirim (Wed Mar 08 2006 - 23:22:17 PST)
- Re: Re: AMBER: bond parameters for positively charged guanidine group FyD (Thu Mar 09 2006 - 00:22:05 PST)
- Re: Re: Re: AMBER: bond parameters for positively charged guanidine group Ye Mei (Thu Mar 09 2006 - 00:40:14 PST)
- Re: Re: Re: AMBER: bond parameters for positively charged guanidine group Bill Ross (Thu Mar 09 2006 - 11:24:57 PST)
- Re: Re: Re: Re: AMBER: bond parameters for positively charged guanidine group Ye Mei (Sat Mar 11 2006 - 09:01:53 PST)
- Re: Re: Re: Re: AMBER: bond parameters for positively charged guanidine group Bill Ross (Sat Mar 11 2006 - 10:37:16 PST)
- Re: Re: AMBER: bond parameters for positively charged guanidine group Ye Mei (Wed Mar 08 2006 - 22:35:51 PST)
- Re: AMBER: bond parameters for positively charged guanidine group Ilyas Yildirim (Wed Mar 08 2006 - 22:18:29 PST)
- AMBER: prepin format nkyx.sohu.com (Wed Mar 08 2006 - 19:18:15 PST)
- Re: AMBER: prepin format David A. Case (Thu Mar 09 2006 - 22:49:22 PST)
- AMBER: CPU utilization with Parallel Sander Jingyuan Luke (Thu Mar 09 2006 - 04:14:01 PST)
- RE: AMBER: CPU utilization with Parallel Sander Ross Walker (Thu Mar 09 2006 - 08:23:08 PST)
- AMBER: Power Mac G5 Shuting Wei (Thu Mar 09 2006 - 15:32:44 PST)
- Re: AMBER: Power Mac G5 David A. Case (Thu Mar 09 2006 - 16:14:54 PST)
- AMBER: RE: hi & question Ross Walker (Thu Mar 09 2006 - 14:14:02 PST)
- AMBER: Antechamber calculations Varsha Goyal (Fri Mar 10 2006 - 11:26:08 PST)
- Re: AMBER: Antechamber calculations Vitor Manuel Sousa F?x (Fri Mar 10 2006 - 12:03:53 PST)
- Re: AMBER: Antechamber calculations Varsha Goyal (Fri Mar 10 2006 - 15:47:41 PST)
- Re: AMBER: Antechamber calculations Vitor Manuel Sousa F?x (Fri Mar 10 2006 - 12:03:53 PST)
- AMBER: error while running sander snoze pa (Fri Mar 10 2006 - 20:23:54 PST)
- Re: AMBER: error while running sander Thomas Cheatham (Fri Mar 10 2006 - 20:41:16 PST)
- AMBER: Input conversion error. Sergey Krishtal (Sat Mar 11 2006 - 05:46:47 PST)
- Re: AMBER: Input conversion error. Carlos Simmerling (Sat Mar 11 2006 - 11:23:29 PST)
- Re[2]: AMBER: Input conversion error. Sergey Krishtal (Mon Mar 13 2006 - 06:52:23 PST)
- Re: AMBER: Input conversion error. Carlos Simmerling (Sat Mar 11 2006 - 11:23:29 PST)
- AMBER: divalent ions Ioana Cozmuta (Sat Mar 11 2006 - 11:04:00 PST)
- AMBER: using MM_PBSA just for binding site, feasible ??? tonglei (Sat Mar 11 2006 - 22:53:44 PST)
- AMBER: Suitable water box simon whitehead (Mon Mar 13 2006 - 04:07:48 PST)
- Re: AMBER: Suitable water box Jianzhong Liu (Mon Mar 13 2006 - 08:20:52 PST)
- AMBER: amber 8 install problem qiwenpeng.sinap.ac.cn (Mon Mar 13 2006 - 05:22:01 PST)
- Re: AMBER: amber 8 install problem David A. Case (Mon Mar 13 2006 - 10:44:40 PST)
- Re: AMBER: amber 8 install problem qiwenpeng.sinap.ac.cn (Wed Mar 15 2006 - 06:27:00 PST)
- Re: AMBER: amber 8 install problem David A. Case (Wed Mar 15 2006 - 12:33:08 PST)
- Re: AMBER: amber 8 install problem David A. Case (Wed Mar 15 2006 - 14:00:08 PST)
- Re: AMBER: amber 8 install problem qiwenpeng.sinap.ac.cn (Wed Mar 15 2006 - 06:27:00 PST)
- Re: AMBER: amber 8 install problem David A. Case (Mon Mar 13 2006 - 10:44:40 PST)
- AMBER: Steve Seibold (Mon Mar 13 2006 - 06:17:41 PST)
- Re: AMBER: David A. Case (Mon Mar 13 2006 - 10:40:19 PST)
- Re: AMBER: Ilyas Yildirim (Mon Mar 13 2006 - 13:35:30 PST)
- AMBER: NTT for production run snoze pa (Mon Mar 13 2006 - 10:03:32 PST)
- Re: AMBER: NTT for production run Vlad Cojocaru (Tue Mar 14 2006 - 00:44:35 PST)
- AMBER: Xleap 64 bit installation problem Cenk Andac (Tue Mar 14 2006 - 03:37:18 PST)
- Re: AMBER: Xleap 64 bit installation problem Andreas Svrcek-Seiler (Tue Mar 14 2006 - 04:16:47 PST)
- Re: AMBER: Xleap 64 bit installation problem David A. Case (Tue Mar 14 2006 - 18:06:30 PST)
- Re: AMBER: NTT for production run David A. Case (Tue Mar 14 2006 - 17:49:46 PST)
- Re: AMBER: NTT for production run Vlad Cojocaru (Wed Mar 15 2006 - 00:53:46 PST)
- RE: AMBER: NTT for production run Ross Walker (Wed Mar 15 2006 - 08:21:50 PST)
- Re: AMBER: NTT for production run snoze pa (Wed Mar 15 2006 - 09:03:22 PST)
- AMBER: Zoom Angelo (Thu Mar 16 2006 - 02:24:39 PST)
- Re: AMBER: Zoom Laurent Chiche (Thu Mar 16 2006 - 07:37:38 PST)
- Re: AMBER: Zoom Angelo (Thu Mar 16 2006 - 07:57:32 PST)
- Re: AMBER: Zoom Laurent Chiche (Thu Mar 16 2006 - 08:40:42 PST)
- Re: AMBER: Zoom Angelo (Thu Mar 16 2006 - 09:04:05 PST)
- Re: AMBER: Zoom Ilyas Yildirim (Thu Mar 16 2006 - 11:50:12 PST)
- Re: AMBER: NTT for production run David A. Case (Wed Mar 15 2006 - 12:21:52 PST)
- Re: AMBER: NTT for production run Vlad Cojocaru (Thu Mar 16 2006 - 01:56:46 PST)
- Re: AMBER: NTT for production run David A. Case (Thu Mar 16 2006 - 10:00:54 PST)
- Re: AMBER: NTT for production run Vlad Cojocaru (Fri Mar 17 2006 - 01:16:36 PST)
- AMBER: Xleap 64 bit installation problem Cenk Andac (Tue Mar 14 2006 - 03:37:18 PST)
- Re: AMBER: NTT for production run Vlad Cojocaru (Tue Mar 14 2006 - 00:44:35 PST)
- AMBER: nucgen error bala (Tue Mar 14 2006 - 07:35:11 PST)
- Re: AMBER: nucgen error Bill Ross (Tue Mar 14 2006 - 09:06:16 PST)
- AMBER: divalent ions Ioana Cozmuta (Tue Mar 14 2006 - 11:54:49 PST)
- Re: AMBER: divalent ions Thomas E. Cheatham, III (Tue Mar 14 2006 - 14:10:19 PST)
- AMBER: quistions about pbsa cacultaion snowyowls (Tue Mar 14 2006 - 17:26:12 PST)
- Re: AMBER: quistions about pbsa cacultaion Ray Luo (Sun Mar 12 2006 - 23:26:53 PST)
- Re: AMBER: quistions about pbsa cacultaion snowyowls (Tue Mar 14 2006 - 18:43:46 PST)
- Re: AMBER: quistions about pbsa cacultaion Ray Luo (Wed Mar 15 2006 - 09:36:56 PST)
- Re: AMBER: quistions about pbsa cacultaion snowyowls (Tue Mar 14 2006 - 18:43:46 PST)
- Re: AMBER: quistions about pbsa cacultaion Ray Luo (Sun Mar 12 2006 - 23:26:53 PST)
- AMBER: k-space cutoff with standard Ewald Guowen (Wed Mar 15 2006 - 08:29:33 PST)
- AMBER: mm-pbsa vorasit vongsutilers (Thu Mar 16 2006 - 07:34:33 PST)
- Re: AMBER: mm-pbsa Holger Gohlke (Thu Mar 16 2006 - 09:33:20 PST)
- Re: AMBER: mm-pbsa vorasit vongsutilers (Fri Mar 17 2006 - 06:03:15 PST)
- Re: AMBER: mm-pbsa Scott Pendley (Fri Mar 17 2006 - 15:41:30 PST)
- Re: AMBER: mm-pbsa vorasit vongsutilers (Sun Mar 19 2006 - 09:45:15 PST)
- Re: AMBER: mm-pbsa Scott Pendley (Mon Mar 20 2006 - 10:06:38 PST)
- Re: AMBER: mm-pbsa vorasit vongsutilers (Fri Mar 17 2006 - 06:03:15 PST)
- Re: AMBER: mm-pbsa Holger Gohlke (Thu Mar 16 2006 - 09:33:20 PST)
- AMBER: faulty ambpdb compilation? Benjamin Juhl (Thu Mar 16 2006 - 10:16:12 PST)
- RE: AMBER: faulty ambpdb compilation? Ross Walker (Thu Mar 16 2006 - 10:44:23 PST)
- Re: AMBER: faulty ambpdb compilation? Benjamin Juhl (Thu Mar 16 2006 - 10:51:47 PST)
- RE: AMBER: faulty ambpdb compilation? Ross Walker (Thu Mar 16 2006 - 10:44:23 PST)
- AMBER: constant pH simulation Abhilash Mohan (Thu Mar 16 2006 - 11:14:47 PST)
- Re: AMBER: constant pH simulation John Mongan (Tue Mar 21 2006 - 15:51:53 PST)
- AMBER: prep files for L-sugar residues Qizhi Cui (Fri Mar 17 2006 - 18:42:56 PST)
- AMBER: Ewald and ibelly Austin B. Yongye (Sun Mar 19 2006 - 08:36:53 PST)
- Re: AMBER: Ewald and ibelly David A. Case (Sun Mar 19 2006 - 22:26:17 PST)
- AMBER: Ewald and ibelly Austin B. Yongye (Sun Mar 19 2006 - 08:36:53 PST)
- Re: AMBER: dynamic memory allocation problem in nmode Cenk Andac (Sun Mar 19 2006 - 01:10:22 PST)
- AMBER: emilia wu (Mon Mar 20 2006 - 04:38:17 PST)
- Re: AMBER: David A. Case (Mon Mar 20 2006 - 22:36:09 PST)
- AMBER: MMPBSA alexandra.marques.fc.up.pt (Tue Mar 21 2006 - 01:58:35 PST)
- Re: AMBER: David A. Case (Mon Mar 20 2006 - 22:36:09 PST)
- AMBER: energy conservation in NVE ensemble (ntt=0, ntb=1) Vlad Cojocaru (Mon Mar 20 2006 - 08:40:37 PST)
- AMBER: a challenge: a periodic box that cuts through a monomer Kenley Barrett (Mon Mar 20 2006 - 14:06:49 PST)
- Re: AMBER: a challenge: a periodic box that cuts through a monomer David A. Case (Mon Mar 20 2006 - 22:29:33 PST)
- AMBER: anal: dihedral error renyanliang (Mon Mar 20 2006 - 17:27:39 PST)
- Re: AMBER: anal: dihedral error David A. Case (Sat Mar 25 2006 - 12:48:36 PST)
- AMBER: heating system snoze pa (Tue Mar 21 2006 - 13:58:25 PST)
- RE: AMBER: heating system Ross Walker (Tue Mar 21 2006 - 15:09:28 PST)
- Re: AMBER: heating system snoze pa (Tue Mar 21 2006 - 15:39:15 PST)
- RE: AMBER: heating system Ross Walker (Wed Mar 22 2006 - 08:58:12 PST)
- RE: AMBER: heating system Ross Walker (Fri Mar 24 2006 - 09:29:32 PST)
- RE: AMBER: heating system Ross Walker (Tue Mar 21 2006 - 15:09:28 PST)
- AMBER: About statistics results in MMPBSA_DC pair Àò ÕÅ (Wed Mar 22 2006 - 07:22:17 PST)
- AMBER: Related to RESTRAINT_WT snoze pa (Wed Mar 22 2006 - 14:06:04 PST)
- Re: AMBER: Related to RESTRAINT_WT David A. Case (Wed Mar 22 2006 - 16:15:29 PST)
- Re: AMBER: Related to RESTRAINT_WT Chng Choon-Peng (Wed Mar 22 2006 - 16:16:13 PST)
- AMBER: Solvating the system with specific number of water molecules... Ilyas Yildirim (Wed Mar 22 2006 - 21:50:25 PST)
- AMBER: about atomic fluctuation & RMSF xueping (Thu Mar 23 2006 - 02:05:03 PST)
- Re: AMBER: about atomic fluctuation & RMSF Holger Gohlke (Thu Mar 23 2006 - 05:01:14 PST)
- Re: AMBER: about atomic fluctuation & RMSF xueping (Sun Mar 26 2006 - 18:39:45 PST)
- Re: AMBER: about atomic fluctuation & RMSF Holger Gohlke (Thu Mar 23 2006 - 05:01:14 PST)
- AMBER: question capping helix ends Zhuang (Thu Mar 23 2006 - 02:35:21 PST)
- Re: AMBER: question capping helix ends Vlad Cojocaru (Thu Mar 23 2006 - 02:48:14 PST)
- AMBER: what is unit of the out put of mmpbsa caculation snowyowls (Thu Mar 23 2006 - 04:47:52 PST)
- Re: AMBER: what is unit of the out put of mmpbsa caculation Holger Gohlke (Thu Mar 23 2006 - 04:53:51 PST)
- AMBER: Average pdb Claire Zerafa (Thu Mar 23 2006 - 13:17:33 PST)
- RE: AMBER: Average pdb John Jett (Thu Mar 23 2006 - 14:32:00 PST)
- AMBER: question capping helix ends Zhuang (Thu Mar 23 2006 - 16:21:06 PST)
- Re: AMBER: question capping helix ends Cenk Andac (Fri Mar 24 2006 - 01:09:11 PST)
- Re: AMBER: question capping helix ends Vlad Cojocaru (Fri Mar 24 2006 - 02:51:24 PST)
- Re: AMBER: question capping helix ends Cenk Andac (Fri Mar 24 2006 - 01:09:11 PST)
- AMBER: Parmtop file: ANGLE_EQUIL_VALUE actually in radians? amanda.mccook.gatech.edu (Thu Mar 23 2006 - 20:32:39 PST)
- RE: AMBER: Parmtop file: ANGLE_EQUIL_VALUE actually in radians? Ross Walker (Thu Mar 23 2006 - 21:38:24 PST)
- AMBER: negative values of PBSOL and PBCAL in mm_pbsa result tonglei (Sun Mar 26 2006 - 18:07:47 PST)
- AMBER: temp control snoze pa (Sun Mar 26 2006 - 19:16:20 PST)
- To dac --AMBER: anal: dihedral error Àò ÕÅ (Sun Mar 26 2006 - 22:43:22 PST)
- AMBER: OSX 10.4 G4 xlf90 compilation errors K. Yarem (Mon Mar 27 2006 - 12:06:59 PST)
- Re: AMBER: OSX 10.4 G4 xlf90 compilation errors David Case (Mon Mar 27 2006 - 12:18:27 PST)
- AMBER: How to give the specific pressure parameter for NTP=2 hbluo (Tue Mar 28 2006 - 09:29:48 PST)
- AMBER: united atoms nadiav.soton.ac.uk (Tue Mar 28 2006 - 03:04:53 PST)
- AMBER: amber8 error installation Abd Ghani Abd Aziz (Tue Mar 28 2006 - 07:14:59 PST)
- Re: AMBER: amber8 error installation Mark Williamson (Tue Mar 28 2006 - 07:23:28 PST)
- Re: AMBER: amber8 error installation Abd Ghani Abd Aziz (Tue Mar 28 2006 - 07:44:42 PST)
- Re: AMBER: amber8 error installation Mark Williamson (Tue Mar 28 2006 - 08:08:46 PST)
- Re: AMBER: amber8 error installation Abd Ghani Abd Aziz (Tue Mar 28 2006 - 08:27:37 PST)
- RE: AMBER: amber8 error installation Ross Walker (Tue Mar 28 2006 - 08:37:34 PST)
- RE: AMBER: amber8 error installation John Bushnell (Tue Mar 28 2006 - 18:20:42 PST)
- RE: AMBER: amber8 error installation Ross Walker (Tue Mar 28 2006 - 20:35:03 PST)
- Re: AMBER: amber8 error installation Abd Ghani Abd Aziz (Tue Mar 28 2006 - 07:44:42 PST)
- Re: AMBER: amber8 error installation Mark Williamson (Tue Mar 28 2006 - 07:23:28 PST)
- Re: AMBER: united atoms Bill Ross (Tue Mar 28 2006 - 09:02:01 PST)
- AMBER: hessian calculation sebnem (Tue Mar 28 2006 - 13:48:19 PST)
- Re: AMBER: hessian calculation David A. Case (Tue Mar 28 2006 - 15:52:14 PST)
- Re: AMBER: hessian calculation sebnem.mercury.chem.pitt.edu (Tue Mar 28 2006 - 16:20:18 PST)
- Re: AMBER: hessian calculation David A. Case (Tue Mar 28 2006 - 18:15:58 PST)
- Re: AMBER: hessian calculation sebnem (Tue Mar 28 2006 - 18:41:52 PST)
- Re: AMBER: hessian calculation sebnem (Tue Mar 28 2006 - 18:53:59 PST)
- Re: AMBER: hessian calculation sebnem.mercury.chem.pitt.edu (Wed Mar 29 2006 - 13:48:38 PST)
- Re: AMBER: hessian calculation David A. Case (Wed Mar 29 2006 - 16:08:34 PST)
- Re: AMBER: hessian calculation sebnem (Thu Mar 30 2006 - 08:22:23 PST)
- Re: AMBER: hessian calculation sebnem.mercury.chem.pitt.edu (Tue Mar 28 2006 - 16:20:18 PST)
- Re: AMBER: hessian calculation David A. Case (Tue Mar 28 2006 - 15:52:14 PST)
- AMBER: AMBER : About the kinetic energy and temperature (GBSA model) James W (Tue Mar 28 2006 - 18:00:46 PST)
- Re: AMBER: AMBER : About the kinetic energy and temperature (GBSA model) David A. Case (Tue Mar 28 2006 - 18:13:44 PST)
- Fw: AMBER: AMBER : About the kinetic energy and temperature (GBSA model) James W (Tue Mar 28 2006 - 19:44:42 PST)
- Re: Fw: AMBER: AMBER : About the kinetic energy and temperature (GBSA model) Thomas Cheatham (Tue Mar 28 2006 - 20:32:37 PST)
- RE: AMBER: AMBER : About the kinetic energy and temperature (GBSA model) Ross Walker (Tue Mar 28 2006 - 20:35:03 PST)
- AMBER: installation problem r. a. (Tue Mar 28 2006 - 19:21:50 PST)
- Re: AMBER: installation problem Mark Williamson (Tue Mar 28 2006 - 19:40:27 PST)
- Re: AMBER: installation problem Abd Ghani Abd Aziz (Tue Mar 28 2006 - 19:50:08 PST)
- AMBER: Impropers definition egorov (Tue Mar 28 2006 - 22:06:40 PST)
- Re: AMBER: Impropers definition David A. Case (Wed Mar 29 2006 - 09:10:27 PST)
- AMBER: Simulating a periodic crystal Jiang Jianwen (Wed Mar 29 2006 - 07:01:26 PST)
- Re: AMBER: Simulating a periodic crystal Thomas Cheatham (Wed Mar 29 2006 - 07:57:10 PST)
- RE: AMBER: Simulating a periodic crystal Jiang Jianwen (Fri Mar 31 2006 - 03:31:47 PST)
- AMBER: Announcement: Amber 9 is now available David A. Case (Wed Mar 29 2006 - 08:43:59 PST)
- Re: AMBER: Announcement: Amber 9 is now available David E. Konerding (Fri Mar 31 2006 - 08:38:06 PST)
- Re: AMBER: Announcement: Amber 9 is now available David A. Case (Fri Mar 31 2006 - 08:56:48 PST)
- Re: AMBER: Announcement: Amber 9 is now available David A. Case (Fri Mar 31 2006 - 09:29:54 PST)
- Re: AMBER: Announcement: Amber 9 is now available David A. Case (Fri Mar 31 2006 - 08:56:48 PST)
- Re: AMBER: Announcement: Amber 9 is now available David E. Konerding (Fri Mar 31 2006 - 08:38:06 PST)
- AMBER: Dimer Image Wrapping Melinda Layten (Wed Mar 29 2006 - 15:12:00 PST)
- Re: AMBER: Dimer Image Wrapping Scott Pendley (Thu Mar 30 2006 - 09:29:23 PST)
- Re: AMBER: Dimer Image Wrapping Melinda Layten (Thu Mar 30 2006 - 10:16:06 PST)
- Re: AMBER: Dimer Image Wrapping Scott Pendley (Thu Mar 30 2006 - 09:29:23 PST)
- AMBER: post-processing replica exchange trajectory Zhuang (Wed Mar 29 2006 - 15:57:43 PST)
- AMBER: Problem with setbox command... Ilyas Yildirim (Wed Mar 29 2006 - 23:44:37 PST)
- Re: AMBER: Problem with setbox command... David A. Case (Thu Mar 30 2006 - 08:06:04 PST)
- Re: AMBER: Problem with setbox command... Ilyas Yildirim (Fri Mar 31 2006 - 04:34:33 PST)
- Re: AMBER: Problem with setbox command... David A. Case (Thu Mar 30 2006 - 08:06:04 PST)
- AMBER: charge constraints in resp Kenley Barrett (Thu Mar 30 2006 - 08:22:36 PST)
- Re: AMBER: charge constraints in resp Ilyas Yildirim (Thu Mar 30 2006 - 09:03:43 PST)
- Re: AMBER: charge constraints in resp Kenley Barrett (Thu Mar 30 2006 - 11:46:49 PST)
- Re: AMBER: charge constraints in resp Ilyas Yildirim (Thu Mar 30 2006 - 16:05:35 PST)
- Re: AMBER: charge constraints in resp Kenley Barrett (Thu Mar 30 2006 - 11:46:49 PST)
- Re: AMBER: charge constraints in resp Ilyas Yildirim (Thu Mar 30 2006 - 09:03:43 PST)
- AMBER: Gromos to Amber Ann Vilan Tran (Thu Mar 30 2006 - 11:29:07 PST)
- AMBER: LES error Claudia Steinert (Thu Mar 30 2006 - 23:59:36 PST)
- AMBER: Ptraj & pca Claire Zerafa (Fri Mar 31 2006 - 06:23:05 PST)
- AMBER: MMPBSA & PBCAL Rabal Gracia María Obdulia (Fri Mar 31 2006 - 07:37:57 PST)
- AMBER: ptraj help - ERROR in readParm: ... failed to find CHARGE fine wu (Fri Mar 31 2006 - 14:09:36 PST)
- Re: AMBER: ptraj help - ERROR in readParm: ... failed to find CHARGE Thomas E. Cheatham, III (Fri Mar 31 2006 - 14:18:57 PST)
- Re: AMBER: ptraj help - ERROR in readParm: ... failed to find CHARGE Ilyas Yildirim (Fri Mar 31 2006 - 16:46:03 PST)
- AMBER: chirality.c error in xleap Kenley Barrett (Fri Mar 31 2006 - 14:43:33 PST)
- Re: AMBER: chirality.c error in xleap David A. Case (Fri Mar 31 2006 - 17:41:53 PST)
- Last message date: Sun Apr 02 2006 - 06:10:17 PDT
- Archived on: Mon Jan 05 2009 - 06:09:21 PST
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