Amber Archive Mar 2006: By Author

A D
- AMBER: rms processing (Mon Mar 06 2006 - 16:21:01 PST)
Abd Ghani Abd Aziz
- Re: AMBER: installation problem (Tue Mar 28 2006 - 19:50:08 PST)
- Re: AMBER: amber8 error installation (Tue Mar 28 2006 - 08:27:37 PST)
- Re: AMBER: amber8 error installation (Tue Mar 28 2006 - 07:44:42 PST)
- AMBER: amber8 error installation (Tue Mar 28 2006 - 07:14:59 PST)
Abhilash Mohan
- AMBER: constant pH simulation (Thu Mar 16 2006 - 11:14:47 PST)
aini.umdnj.edu
- AMBER: question about solvatecap commander (Tue Mar 07 2006 - 18:46:41 PST)
alexandra.marques.fc.up.pt
- AMBER: MMPBSA (Tue Mar 21 2006 - 01:58:35 PST)
- AMBER: MD and MMPBSA (Wed Mar 08 2006 - 20:29:23 PST)
amanda.mccook.gatech.edu
- AMBER: Parmtop file: ANGLE_EQUIL_VALUE actually in radians? (Thu Mar 23 2006 - 20:32:39 PST)
Andreas Svrcek-Seiler
- Re: AMBER: Xleap 64 bit installation problem (Tue Mar 14 2006 - 04:16:47 PST)
- Re: AMBER: amber8 and gfortran 4.1.0 (Thu Mar 02 2006 - 08:35:16 PST)
Angelo
- Re: AMBER: Zoom (Thu Mar 16 2006 - 09:04:05 PST)
- Re: AMBER: Zoom (Thu Mar 16 2006 - 07:57:32 PST)
- AMBER: Zoom (Thu Mar 16 2006 - 02:24:39 PST)
Ann Vilan Tran
- AMBER: Gromos to Amber (Thu Mar 30 2006 - 11:29:07 PST)
Austin B. Yongye
- AMBER: Ewald and ibelly (Sun Mar 19 2006 - 08:36:53 PST)
bala
- AMBER: nucgen error (Tue Mar 14 2006 - 07:35:11 PST)
Benjamin Juhl
- Re: AMBER: faulty ambpdb compilation? (Thu Mar 16 2006 - 10:51:47 PST)
- AMBER: faulty ambpdb compilation? (Thu Mar 16 2006 - 10:16:12 PST)
Bill Ross
- Re: AMBER: united atoms (Tue Mar 28 2006 - 09:02:01 PST)
- Re: AMBER: nucgen error (Tue Mar 14 2006 - 09:06:16 PST)
- Re: Re: Re: Re: AMBER: bond parameters for positively charged guanidine group (Sat Mar 11 2006 - 10:37:16 PST)
- Re: Re: Re: AMBER: bond parameters for positively charged guanidine group (Thu Mar 09 2006 - 11:24:57 PST)
- Re: AMBER: modeling a non-standard molecule. (Wed Mar 08 2006 - 13:47:50 PST)
- Re: AMBER: modeling a non-standard molecule. (Wed Mar 08 2006 - 13:19:21 PST)
- Re: AMBER: converting .lib files (Wed Mar 08 2006 - 08:30:17 PST)
biolabadmin.ibt.lt
- Re: AMBER: install error (Fri Mar 03 2006 - 01:47:11 PST)
- Re: AMBER: install error (Thu Mar 02 2006 - 04:48:17 PST)
- AMBER: install error (Wed Mar 01 2006 - 03:13:12 PST)
Brian Stupi
- Re: AMBER: Problem taking the PDB to the Amber coordinates for calculations (Tue Mar 07 2006 - 11:55:13 PST)
- Re: AMBER: Problem taking the PDB to the Amber coordinates for calculations (Tue Mar 07 2006 - 11:30:59 PST)
- AMBER: Problem taking the PDB to the Amber coordinates for calculations (Mon Mar 06 2006 - 15:17:22 PST)
Carlos Simmerling
- Re: AMBER: Input conversion error. (Sat Mar 11 2006 - 11:23:29 PST)
- Re: AMBER: Different results between serial and parallel runs in AMBER 8 (Mon Mar 06 2006 - 16:33:14 PST)
- Re: AMBER: AMBER 8 VS AMBER 7 (Thu Mar 02 2006 - 13:04:09 PST)
- Re: AMBER: GAFF + AM1BCC & small-molecule aggregation (Wed Mar 01 2006 - 14:00:40 PST)
- Re: AMBER: GAFF + AM1BCC & small-molecule aggregation (Wed Mar 01 2006 - 13:34:06 PST)
- Re: AMBER: replica exchange hangs (Wed Mar 01 2006 - 10:37:40 PST)
- Re: AMBER: replica exchange hangs (Wed Mar 01 2006 - 10:37:04 PST)
Cenk Andac
- Re: AMBER: question capping helix ends (Fri Mar 24 2006 - 01:09:11 PST)
- Re: AMBER: dynamic memory allocation problem in nmode (Sun Mar 19 2006 - 01:10:22 PST)
- AMBER: Xleap 64 bit installation problem (Tue Mar 14 2006 - 03:37:18 PST)
- Re: AMBER: the total energy is not converge as the cutoff increase (Mon Mar 06 2006 - 05:28:04 PST)
- AMBER: G95, SGI and Amber8 (Thu Mar 02 2006 - 23:30:44 PST)
- AMBER: transition metals and the parmcal of the antechamber module (Thu Mar 02 2006 - 03:09:44 PST)
Chng Choon-Peng
- Re: AMBER: Related to RESTRAINT_WT (Wed Mar 22 2006 - 16:16:13 PST)
- Re: AMBER: how to calculate the RMSD and B-factor for all atoms of residue (Mon Mar 06 2006 - 00:51:13 PST)
- Re: AMBER: Which PTRAJ distribution to use? (Thu Mar 02 2006 - 16:27:15 PST)
- AMBER: Which PTRAJ distribution to use? (Wed Mar 01 2006 - 23:30:49 PST)
Claire Zerafa
- AMBER: Ptraj & pca (Fri Mar 31 2006 - 06:23:05 PST)
- AMBER: Average pdb (Thu Mar 23 2006 - 13:17:33 PST)
- AMBER: h bond analysis (Mon Mar 06 2006 - 21:39:52 PST)
Claudia Steinert
- AMBER: LES error (Thu Mar 30 2006 - 23:59:36 PST)
David A. Case
- Re: AMBER: chirality.c error in xleap (Fri Mar 31 2006 - 17:41:53 PST)
- Re: AMBER: Announcement: Amber 9 is now available (Fri Mar 31 2006 - 09:29:54 PST)
- Re: AMBER: Announcement: Amber 9 is now available (Fri Mar 31 2006 - 08:56:48 PST)
- Re: AMBER: Problem with setbox command... (Thu Mar 30 2006 - 08:06:04 PST)
- Re: AMBER: hessian calculation (Wed Mar 29 2006 - 16:08:34 PST)
- Re: AMBER: Impropers definition (Wed Mar 29 2006 - 09:10:27 PST)
- AMBER: Announcement: Amber 9 is now available (Wed Mar 29 2006 - 08:43:59 PST)
- Re: AMBER: hessian calculation (Tue Mar 28 2006 - 18:15:58 PST)
- Re: AMBER: AMBER : About the kinetic energy and temperature (GBSA model) (Tue Mar 28 2006 - 18:13:44 PST)
- Re: AMBER: hessian calculation (Tue Mar 28 2006 - 15:52:14 PST)
- Re: AMBER: anal: dihedral error (Sat Mar 25 2006 - 12:48:36 PST)
- Re: AMBER: Related to RESTRAINT_WT (Wed Mar 22 2006 - 16:15:29 PST)
- Re: AMBER: (Mon Mar 20 2006 - 22:36:09 PST)
- Re: AMBER: a challenge: a periodic box that cuts through a monomer (Mon Mar 20 2006 - 22:29:33 PST)
- Re: AMBER: Ewald and ibelly (Sun Mar 19 2006 - 22:26:17 PST)
- Re: AMBER: NTT for production run (Thu Mar 16 2006 - 10:00:54 PST)
- Re: AMBER: amber 8 install problem (Wed Mar 15 2006 - 14:00:08 PST)
- Re: AMBER: amber 8 install problem (Wed Mar 15 2006 - 12:33:08 PST)
- Re: AMBER: NTT for production run (Wed Mar 15 2006 - 12:21:52 PST)
- Re: AMBER: Xleap 64 bit installation problem (Tue Mar 14 2006 - 18:06:30 PST)
- Re: AMBER: NTT for production run (Tue Mar 14 2006 - 17:49:46 PST)
- Re: AMBER: amber 8 install problem (Mon Mar 13 2006 - 10:44:40 PST)
- Re: AMBER: (Mon Mar 13 2006 - 10:40:19 PST)
- Re: AMBER: prepin format (Thu Mar 09 2006 - 22:49:22 PST)
- Re: AMBER: Power Mac G5 (Thu Mar 09 2006 - 16:14:54 PST)
- Re: AMBER: Cosine content calculation (Thu Mar 09 2006 - 08:33:53 PST)
- Re: AMBER: Cosine content calculation (Wed Mar 08 2006 - 12:09:54 PST)
- Re: AMBER:molsurf: molsurf.c:1057: is_buried: Assertion `sarg1 >= 0.0' failed (Wed Mar 08 2006 - 08:46:55 PST)
- Re: AMBER: NADP(H) parameters (Wed Mar 08 2006 - 08:26:04 PST)
- Re: AMBER: converting .lib files (Wed Mar 08 2006 - 08:06:38 PST)
- Re: AMBER: question about solvatecap commander (Tue Mar 07 2006 - 19:32:12 PST)
- Re: AMBER: Problem taking the PDB to the Amber coordinates for calculations (Tue Mar 07 2006 - 11:47:30 PST)
- Re: AMBER: Amber 8 under Solaris 9 compilation failed (Tue Mar 07 2006 - 08:35:35 PST)
- Re: AMBER: Different results between serial and parallel runs in AMBER 8 (Tue Mar 07 2006 - 08:23:21 PST)
- Re: AMBER: Different results between serial and parallel runs in AMBER 8 (Tue Mar 07 2006 - 08:26:23 PST)
- Re: AMBER: Different results between serial and parallel runs in AMBER 8 (Mon Mar 06 2006 - 18:05:31 PST)
- Re: AMBER: How to patch the configure script (macosx) (Mon Mar 06 2006 - 10:25:16 PST)
- Re: AMBER: Amber 9. (Fri Mar 03 2006 - 09:29:25 PST)
- Re: AMBER: AMBER 8 VS AMBER 7 (Thu Mar 02 2006 - 12:42:39 PST)
- Re: AMBER: amber8 and gfortran 4.1.0 (Thu Mar 02 2006 - 10:07:05 PST)
- Re: AMBER: N-H and C-H Residual Dipolar Coupling (Wed Mar 01 2006 - 14:38:09 PST)
- Re: AMBER: Nmode vs QM Freq Calculation (Wed Mar 01 2006 - 10:54:12 PST)
David Case
- Re: AMBER: OSX 10.4 G4 xlf90 compilation errors (Mon Mar 27 2006 - 12:18:27 PST)
David E. Konerding
- Re: AMBER: Announcement: Amber 9 is now available (Fri Mar 31 2006 - 08:38:06 PST)
Dmitry Osolodkin
- AMBER: leap: syntax error when use source command (Wed Mar 01 2006 - 04:27:47 PST)
Dror
- AMBER: (Wed Mar 08 2006 - 02:09:28 PST)
- AMBER: Amber 8 under Solaris 9 compilation failed (Mon Mar 06 2006 - 23:03:03 PST)
- AMBER: Amber 8 under Solaris 9 compilation failed (Mon Mar 06 2006 - 23:12:19 PST)
egorov
- AMBER: Impropers definition (Tue Mar 28 2006 - 22:06:40 PST)
emilia wu
- AMBER: (Mon Mar 20 2006 - 04:38:17 PST)
fine wu
- AMBER: ptraj help - ERROR in readParm: ... failed to find CHARGE (Fri Mar 31 2006 - 14:09:36 PST)
FyD
- Re: Re: AMBER: bond parameters for positively charged guanidine group (Thu Mar 09 2006 - 00:22:05 PST)
- Re: AMBER: Trouble with combining a non-standard residue with a protein of standard residue (Wed Mar 08 2006 - 21:37:07 PST)
- Re: AMBER: How to develop charge for my deprotonated glycine (Sat Mar 04 2006 - 01:26:13 PST)
- Re: AMBER: How to develop charge for my deprotonated glycine (Tue Feb 28 2006 - 21:00:37 PST)
german
- Re: AMBER: about Br- parameters (Fri Mar 03 2006 - 02:52:50 PST)
Guowen
- AMBER: k-space cutoff with standard Ewald (Wed Mar 15 2006 - 08:29:33 PST)
haixiao jin
- Re: AMBER: how to calculate the RMSD and B-factor for all atoms of residue (Tue Mar 07 2006 - 00:10:02 PST)
- AMBER: how to calculate the RMSD and B-factor for all atoms of residue (Mon Mar 06 2006 - 00:13:04 PST)
Hannes Loeffler
- Re: AMBER: Cosine content calculation (Thu Mar 09 2006 - 17:02:48 PST)
hbluo
- AMBER: How to give the specific pressure parameter for NTP=2 (Tue Mar 28 2006 - 09:29:48 PST)
Holger Gohlke
- Re: AMBER: about atomic fluctuation & RMSF (Thu Mar 23 2006 - 05:01:14 PST)
- Re: AMBER: what is unit of the out put of mmpbsa caculation (Thu Mar 23 2006 - 04:53:51 PST)
- Re: AMBER: mm-pbsa (Thu Mar 16 2006 - 09:33:20 PST)
Ilyas Yildirim
- Re: AMBER: ptraj help - ERROR in readParm: ... failed to find CHARGE (Fri Mar 31 2006 - 16:46:03 PST)
- Re: AMBER: Problem with setbox command... (Fri Mar 31 2006 - 04:34:33 PST)
- Re: AMBER: charge constraints in resp (Thu Mar 30 2006 - 16:05:35 PST)
- Re: AMBER: charge constraints in resp (Thu Mar 30 2006 - 09:03:43 PST)
- AMBER: Problem with setbox command... (Wed Mar 29 2006 - 23:44:37 PST)
- AMBER: Solvating the system with specific number of water molecules... (Wed Mar 22 2006 - 21:50:25 PST)
- Re: AMBER: Zoom (Thu Mar 16 2006 - 11:50:12 PST)
- Re: AMBER: (Mon Mar 13 2006 - 13:35:30 PST)
- Re: Re: AMBER: bond parameters for positively charged guanidine group (Wed Mar 08 2006 - 23:22:17 PST)
- Re: AMBER: bond parameters for positively charged guanidine group (Wed Mar 08 2006 - 22:18:29 PST)
- Re: AMBER: aligning polymer with Z-axis of periodic box (Wed Mar 08 2006 - 14:54:22 PST)
- Re: AMBER: Different results between serial and parallel runs in AMBER 8 (Tue Mar 07 2006 - 05:45:01 PST)
- Re: AMBER: Different results between serial and parallel runs in AMBER 8 (Tue Mar 07 2006 - 04:51:14 PST)
- Re: AMBER: rms processing (Mon Mar 06 2006 - 16:41:37 PST)
- AMBER: Different results between serial and parallel runs in AMBER 8 (Mon Mar 06 2006 - 16:28:14 PST)
- Re: AMBER: Problem taking the PDB to the Amber coordinates for calculations (Mon Mar 06 2006 - 15:42:29 PST)
Ioana Cozmuta
- AMBER: divalent ions (Tue Mar 14 2006 - 11:54:49 PST)
- AMBER: divalent ions (Sat Mar 11 2006 - 11:04:00 PST)
James W
- Fw: AMBER: AMBER : About the kinetic energy and temperature (GBSA model) (Tue Mar 28 2006 - 19:44:42 PST)
- AMBER: AMBER : About the kinetic energy and temperature (GBSA model) (Tue Mar 28 2006 - 18:00:46 PST)
JAVIER PEREZ
- AMBER: about Br- parameters (Fri Mar 03 2006 - 02:18:23 PST)
Jiang Jianwen
- RE: AMBER: Simulating a periodic crystal (Fri Mar 31 2006 - 03:31:47 PST)
- AMBER: Simulating a periodic crystal (Wed Mar 29 2006 - 07:01:26 PST)
Jianyin Shao
- Re: AMBER: rms processing (Mon Mar 20 2006 - 14:19:25 PST)
Jianzhong Liu
- Re: AMBER: Suitable water box (Mon Mar 13 2006 - 08:20:52 PST)
- Re: AMBER: How to develop charge for my deprotonated glycine (Sat Mar 04 2006 - 19:05:12 PST)
- Re: AMBER: How to develop charge for my deprotonated glycine (Fri Mar 03 2006 - 11:05:41 PST)
Jingyuan Luke
- AMBER: CPU utilization with Parallel Sander (Thu Mar 09 2006 - 04:14:01 PST)
John Bushnell
- RE: AMBER: amber8 error installation (Tue Mar 28 2006 - 18:20:42 PST)
John Jett
- RE: AMBER: Average pdb (Thu Mar 23 2006 - 14:32:00 PST)
John Mongan
- Re: AMBER: constant pH simulation (Tue Mar 21 2006 - 15:51:53 PST)
Joseph Nachman
- Re: AMBER: failed to save prm and xyz using ff96 (Wed Mar 01 2006 - 15:29:18 PST)
- Re: AMBER: failed to save prm and xyz using ff96 (Wed Mar 01 2006 - 12:51:09 PST)
K. Yarem
- AMBER: OSX 10.4 G4 xlf90 compilation errors (Mon Mar 27 2006 - 12:06:59 PST)
- AMBER: How to patch the configure script (macosx) (Mon Mar 06 2006 - 07:40:58 PST)
Kateryna Miroshnychenko
- RE:AMBER: leap: syntax error when use source command (Wed Mar 01 2006 - 04:58:22 PST)
Kenley Barrett
- AMBER: chirality.c error in xleap (Fri Mar 31 2006 - 14:43:33 PST)
- Re: AMBER: charge constraints in resp (Thu Mar 30 2006 - 11:46:49 PST)
- AMBER: charge constraints in resp (Thu Mar 30 2006 - 08:22:36 PST)
- AMBER: a challenge: a periodic box that cuts through a monomer (Mon Mar 20 2006 - 14:06:49 PST)
- Re: AMBER: aligning polymer with Z-axis of periodic box (Wed Mar 08 2006 - 17:26:12 PST)
- AMBER: aligning polymer with Z-axis of periodic box (Wed Mar 08 2006 - 13:59:18 PST)
Laurent Chiche
- Re: AMBER: Zoom (Thu Mar 16 2006 - 08:40:42 PST)
- Re: AMBER: Zoom (Thu Mar 16 2006 - 07:37:38 PST)
Manish Datt
- AMBER: charge neutralization with GB (Sun Mar 05 2006 - 09:27:34 PST)
Mark Williamson
- Re: AMBER: installation problem (Tue Mar 28 2006 - 19:40:27 PST)
- Re: AMBER: amber8 error installation (Tue Mar 28 2006 - 08:08:46 PST)
- Re: AMBER: amber8 error installation (Tue Mar 28 2006 - 07:23:28 PST)
- Re: AMBER: install error (Thu Mar 02 2006 - 03:13:40 PST)
- AMBER: Nmode vs QM Freq Calculation (Wed Mar 01 2006 - 03:28:57 PST)
Mathy Froeyen
- Re: AMBER: about Br- parameters (Fri Mar 03 2006 - 06:38:42 PST)
matteo filandri
- Re: AMBER: Cosine content calculation (Thu Mar 09 2006 - 02:01:20 PST)
- AMBER: Cosine content calculation (Wed Mar 08 2006 - 07:59:58 PST)
Melinda Layten
- Re: AMBER: Dimer Image Wrapping (Thu Mar 30 2006 - 10:16:06 PST)
- AMBER: Dimer Image Wrapping (Wed Mar 29 2006 - 15:12:00 PST)
- Re: AMBER: sander restart problem (Mon Mar 06 2006 - 09:35:01 PST)
mfyang
- Re: AMBER: question about solvatecap commander (Tue Mar 07 2006 - 19:07:08 PST)
nadiav.soton.ac.uk
- AMBER: united atoms (Tue Mar 28 2006 - 03:04:53 PST)
Nitin Bhardwaj
- Re: AMBER: modeling a non-standard molecule. (Wed Mar 08 2006 - 13:27:10 PST)
- AMBER: modeling a non-standard molecule. (Wed Mar 08 2006 - 13:02:50 PST)
- AMBER: Trouble with combining a non-standard residue with a protein of standard residue (Tue Mar 07 2006 - 13:21:44 PST)
nkyx.sohu.com
- AMBER: prepin format (Wed Mar 08 2006 - 19:18:15 PST)
Peter Varnai
- Re: AMBER: replica exchange hangs (Wed Mar 01 2006 - 10:56:21 PST)
- AMBER: replica exchange hangs (Wed Mar 01 2006 - 09:29:34 PST)
qiwenpeng.sinap.ac.cn
- Re: AMBER: amber 8 install problem (Wed Mar 15 2006 - 06:27:00 PST)
- AMBER: amber 8 install problem (Mon Mar 13 2006 - 05:22:01 PST)
Qizhi Cui
- AMBER: prep files for L-sugar residues (Fri Mar 17 2006 - 18:42:56 PST)
r. a.
- AMBER: installation problem (Tue Mar 28 2006 - 19:21:50 PST)
Rabal Gracia María Obdulia
- AMBER: MMPBSA & PBCAL (Fri Mar 31 2006 - 07:37:57 PST)
Ray Luo
- Re: AMBER: quistions about pbsa cacultaion (Wed Mar 15 2006 - 09:36:56 PST)
- Re: AMBER: quistions about pbsa cacultaion (Sun Mar 12 2006 - 23:26:53 PST)
renyanliang
- AMBER: anal: dihedral error (Mon Mar 20 2006 - 17:27:39 PST)
Ross Walker
- RE: AMBER: amber8 error installation (Tue Mar 28 2006 - 20:35:03 PST)
- RE: AMBER: AMBER : About the kinetic energy and temperature (GBSA model) (Tue Mar 28 2006 - 20:35:03 PST)
- RE: AMBER: amber8 error installation (Tue Mar 28 2006 - 08:37:34 PST)
- RE: AMBER: heating system (Fri Mar 24 2006 - 09:29:32 PST)
- RE: AMBER: Parmtop file: ANGLE_EQUIL_VALUE actually in radians? (Thu Mar 23 2006 - 21:38:24 PST)
- RE: AMBER: heating system (Wed Mar 22 2006 - 08:58:12 PST)
- RE: AMBER: heating system (Tue Mar 21 2006 - 15:09:28 PST)
- RE: AMBER: faulty ambpdb compilation? (Thu Mar 16 2006 - 10:44:23 PST)
- RE: AMBER: NTT for production run (Wed Mar 15 2006 - 08:21:50 PST)
- AMBER: RE: hi & question (Thu Mar 09 2006 - 14:14:02 PST)
- RE: AMBER: CPU utilization with Parallel Sander (Thu Mar 09 2006 - 08:23:08 PST)
- RE: AMBER: MD and MMPBSA (Wed Mar 08 2006 - 21:26:34 PST)
- RE: AMBER: the total energy is not converge as the cutoff increase (Mon Mar 06 2006 - 07:39:51 PST)
- RE: AMBER: generating parameters for the NADH analogue H4NAD (Thu Mar 02 2006 - 15:32:27 PST)
- RE: AMBER: amber8 and gfortran 4.1.0 (Thu Mar 02 2006 - 08:17:49 PST)
- RE: AMBER: install error (Wed Mar 01 2006 - 08:08:24 PST)
Scott Brozell
- Re: AMBER: Amber 8 under Solaris 9 compilation failed (Sun Mar 26 2006 - 23:16:27 PST)
Scott P Brown
- AMBER: GAFF + AM1BCC & small-molecule aggregation (Wed Mar 01 2006 - 12:00:33 PST)
Scott Pendley
- Re: AMBER: Dimer Image Wrapping (Thu Mar 30 2006 - 09:29:23 PST)
- Re: AMBER: mm-pbsa (Mon Mar 20 2006 - 10:06:38 PST)
- Re: AMBER: mm-pbsa (Fri Mar 17 2006 - 15:41:30 PST)
sebnem
- Re: AMBER: hessian calculation (Thu Mar 30 2006 - 08:22:23 PST)
- Re: AMBER: hessian calculation (Tue Mar 28 2006 - 18:53:59 PST)
- Re: AMBER: hessian calculation (Tue Mar 28 2006 - 18:41:52 PST)
- AMBER: hessian calculation (Tue Mar 28 2006 - 13:48:19 PST)
sebnem.mercury.chem.pitt.edu
- Re: AMBER: hessian calculation (Wed Mar 29 2006 - 13:48:38 PST)
- Re: AMBER: hessian calculation (Tue Mar 28 2006 - 16:20:18 PST)
Sergey Krishtal
- Re[2]: AMBER: Input conversion error. (Mon Mar 13 2006 - 06:52:23 PST)
- AMBER: Input conversion error. (Sat Mar 11 2006 - 05:46:47 PST)
- AMBER: Amber 9. (Wed Mar 01 2006 - 19:37:02 PST)
- Re: AMBER: replica exchange hangs (Wed Mar 01 2006 - 10:15:46 PST)
Shulin Zhuang
- Re: AMBER: about Br- parameters (Fri Mar 03 2006 - 03:04:27 PST)
Shuting Wei
- AMBER: Power Mac G5 (Thu Mar 09 2006 - 15:32:44 PST)
simon whitehead
- AMBER: Suitable water box (Mon Mar 13 2006 - 04:07:48 PST)
- AMBER: converting .lib files (Wed Mar 08 2006 - 02:51:25 PST)
- AMBER: NADP(H) parameters (Wed Mar 08 2006 - 02:06:45 PST)
- RE: AMBER: generating parameters for the NADH analogue H4NAD (Thu Mar 02 2006 - 15:17:50 PST)
snowyowls
- AMBER: what is unit of the out put of mmpbsa caculation (Thu Mar 23 2006 - 04:47:52 PST)
- Re: AMBER: quistions about pbsa cacultaion (Tue Mar 14 2006 - 18:43:46 PST)
- AMBER: quistions about pbsa cacultaion (Tue Mar 14 2006 - 17:26:12 PST)
- AMBER:molsurf: molsurf.c:1057: is_buried: Assertion `sarg1 >= 0.0' failed (Tue Mar 07 2006 - 23:18:02 PST)
snoze pa
- AMBER: temp control (Sun Mar 26 2006 - 19:16:20 PST)
- AMBER: Related to RESTRAINT_WT (Wed Mar 22 2006 - 14:06:04 PST)
- Re: AMBER: heating system (Tue Mar 21 2006 - 15:39:15 PST)
- AMBER: heating system (Tue Mar 21 2006 - 13:58:25 PST)
- Re: AMBER: NTT for production run (Wed Mar 15 2006 - 09:03:22 PST)
- AMBER: NTT for production run (Mon Mar 13 2006 - 10:03:32 PST)
- AMBER: error while running sander (Fri Mar 10 2006 - 20:23:54 PST)
Stefano Federico Massimiliano Pieraccini (Stefano.Pieraccini)
- Re: AMBER: the total energy is not converge as the cutoff increase (Mon Mar 06 2006 - 01:28:52 PST)
Steve Seibold
- AMBER: (Mon Mar 13 2006 - 06:17:41 PST)
thanyarat Udom
- RE: AMBER: the total energy is not converge as the cutoff increase (Mon Mar 06 2006 - 23:17:23 PST)
- AMBER: the total energy is not converge as the cutoff increase (Mon Mar 06 2006 - 00:51:46 PST)
thenmalar
- Re: AMBER: N-H and C-H Residual Dipolar Coupling (Wed Mar 01 2006 - 16:59:34 PST)
- AMBER: N-H and C-H Residual Dipolar Coupling (Wed Mar 01 2006 - 14:01:52 PST)
Thomas Cheatham
- Re: AMBER: Simulating a periodic crystal (Wed Mar 29 2006 - 07:57:10 PST)
- Re: Fw: AMBER: AMBER : About the kinetic energy and temperature (GBSA model) (Tue Mar 28 2006 - 20:32:37 PST)
- Re: AMBER: error while running sander (Fri Mar 10 2006 - 20:41:16 PST)
- Re: AMBER: Problem taking the PDB to the Amber coordinates for calculations (Mon Mar 06 2006 - 15:51:08 PST)
- Re: AMBER: Which PTRAJ distribution to use? (Thu Mar 02 2006 - 15:47:51 PST)
Thomas E. Cheatham, III
- Re: AMBER: ptraj help - ERROR in readParm: ... failed to find CHARGE (Fri Mar 31 2006 - 14:18:57 PST)
- Re: AMBER: divalent ions (Tue Mar 14 2006 - 14:10:19 PST)
- Re: AMBER: GAFF + AM1BCC & small-molecule aggregation (Wed Mar 01 2006 - 13:17:35 PST)
tonglei
- AMBER: negative values of PBSOL and PBCAL in mm_pbsa result (Sun Mar 26 2006 - 18:07:47 PST)
- AMBER: using MM_PBSA just for binding site, feasible ??? (Sat Mar 11 2006 - 22:53:44 PST)
Tru Huynh
- Re: AMBER: amber8 and gfortran 4.1.0 (Thu Mar 02 2006 - 09:57:59 PST)
- Re: AMBER: amber8 and gfortran 4.1.0 (Thu Mar 02 2006 - 09:55:10 PST)
- AMBER: amber8 and gfortran 4.1.0 (Thu Mar 02 2006 - 08:00:00 PST)
Varsha Goyal
- Re: AMBER: Antechamber calculations (Fri Mar 10 2006 - 15:47:41 PST)
- AMBER: Antechamber calculations (Fri Mar 10 2006 - 11:26:08 PST)
venditti2.unisi.it
- AMBER: AMBER 8 VS AMBER 7 (Thu Mar 02 2006 - 11:54:47 PST)
Viktor Hornak
- Re: AMBER: failed to save prm and xyz using ff96 (Wed Mar 01 2006 - 13:16:13 PST)
Vitor Manuel Sousa F?x
- Re: AMBER: Antechamber calculations (Fri Mar 10 2006 - 12:03:53 PST)
- Re: AMBER: about Br- parameters (Fri Mar 03 2006 - 06:48:24 PST)
- Re: AMBER: about Br- parameters (Fri Mar 03 2006 - 02:28:40 PST)
Vlad Cojocaru
- Re: AMBER: question capping helix ends (Fri Mar 24 2006 - 02:51:24 PST)
- Re: AMBER: question capping helix ends (Thu Mar 23 2006 - 02:48:14 PST)
- AMBER: energy conservation in NVE ensemble (ntt=0, ntb=1) (Mon Mar 20 2006 - 08:40:37 PST)
- Re: AMBER: NTT for production run (Fri Mar 17 2006 - 01:16:36 PST)
- Re: AMBER: NTT for production run (Thu Mar 16 2006 - 01:56:46 PST)
- Re: AMBER: NTT for production run (Wed Mar 15 2006 - 00:53:46 PST)
- Re: AMBER: NTT for production run (Tue Mar 14 2006 - 00:44:35 PST)
- AMBER: sander restart problem (Sun Mar 05 2006 - 05:31:30 PST)
vorasit vongsutilers
- Re: AMBER: mm-pbsa (Sun Mar 19 2006 - 09:45:15 PST)
- Re: AMBER: mm-pbsa (Fri Mar 17 2006 - 06:03:15 PST)
- AMBER: mm-pbsa (Thu Mar 16 2006 - 07:34:33 PST)
Wei Zhang
- AMBER: from Wei Zhang: flight information (Fri Mar 03 2006 - 10:45:59 PST)
xueping
- Re: AMBER: about atomic fluctuation & RMSF (Sun Mar 26 2006 - 18:39:45 PST)
- AMBER: about atomic fluctuation & RMSF (Thu Mar 23 2006 - 02:05:03 PST)
Yam
- AMBER: ptraj: hbond analysis (Tue Mar 07 2006 - 00:03:08 PST)
- AMBER: ptraj:hbond question (Sun Mar 05 2006 - 19:09:39 PST)
Ye Mei
- Re: Re: Re: Re: AMBER: bond parameters for positively charged guanidine group (Sat Mar 11 2006 - 09:01:53 PST)
- Re: Re: Re: AMBER: bond parameters for positively charged guanidine group (Thu Mar 09 2006 - 00:40:14 PST)
- Re: Re: AMBER: bond parameters for positively charged guanidine group (Wed Mar 08 2006 - 22:35:51 PST)
- AMBER: bond parameters for positively charged guanidine group (Wed Mar 08 2006 - 18:54:15 PST)
Zhuang
- AMBER: post-processing replica exchange trajectory (Wed Mar 29 2006 - 15:57:43 PST)
- AMBER: question capping helix ends (Thu Mar 23 2006 - 16:21:06 PST)
- AMBER: question capping helix ends (Thu Mar 23 2006 - 02:35:21 PST)
Àò ÕÅ
- To dac --AMBER: anal: dihedral error (Sun Mar 26 2006 - 22:43:22 PST)
- AMBER: About statistics results in MMPBSA_DC pair (Wed Mar 22 2006 - 07:22:17 PST)

Amber Archive Mar 2006 By Author