dear Amber users,
at the most time, we just need to obtain the RMSD and B-factor of CA
atom or backbone atoms.
however, to get the conformation change of a special loop in MD
simulation, the RMSD and B-factor of all atoms in this loop is useful. but i
do not know how to make the input file for ptraj analysis.
is there anyone who made the input file for analysis the RMSD and
B-factor for all atoms? i need you help, thank you!
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Received on Sun Mar 12 2006 - 06:10:07 PST
