I had the bugfix.all (
http://amber.scripps.edu/bugfixes/8.0/bugfix.all)
applied which i got 22.feb 2006. I checked that file and it contained
the bugfix.29.
Benjamin Juhl
Ross Walker schrieb
>Dear Benjamin,
>
>Have you applied this bugfix?
>http://amber.ch.ic.ac.uk/bugfixes/8.0/bugfix.29
>
>All the best
>Ross
>
>/\
>\/
>|\oss Walker
>
>| HPC Consultant and Staff Scientist |
>| San Diego Supercomputer Center |
>| Tel: +1 858 822 0854 | EMail:- ross.rosswalker.co.uk |
>| http://www.rosswalker.co.uk | PGP Key available on request |
>
>Note: Electronic Mail is not secure, has no guarantee of delivery, may not
>be read every day, and should not be used for urgent or sensitive issues.
>
>
>
>>-----Original Message-----
>>From: owner-amber.scripps.edu
>>[mailto:owner-amber.scripps.edu] On Behalf Of Benjamin Juhl
>>Sent: Thursday, March 16, 2006 10:16
>>To: amber.scripps.edu
>>Subject: AMBER: faulty ambpdb compilation?
>>
>>Dear Amber users,
>>
>>i am currently using amber8 compiled with a pathscale
>>compiler. When i
>>tried to construct pdb files from my restart files using ambpdb i got
>>following error:
>>-----------------------------------------------
>>| New format PARM file being parsed.
>>| Version = 1.000 Date = 03/16/06 Time = 17:58:37
>>
>>
>>**** Segmentation fault! Fault address: 0x18
>>
>>Fault address is 4194280 bytes below the first valid
>>mapping boundary, which is at 0x400000.
>>
>>This may have been caused by a struct access through a null pointer.
>>Aborted
>>-------------------------------------------------
>>
>>The strange thing is that i only get this for some of my
>>restart files,
>>while others can be used to create pdb files without error.
>>When i tried
>>to use those problematic restart files with an old ambpdb (from my
>>amber7 installation), i could construct pdb files without
>>generating an
>>error.
>>Has anyone experience with a similar problem?
>>
>>Thanks,
>>Benjamin Juhl
>>--------------------------------------------------------------
>>---------
>>The AMBER Mail Reflector
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>>
>>
>>
>
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Received on Sun Mar 19 2006 - 06:10:22 PST
