Amber Archive Jan 2005: by author

Adrian E. Roitberg
- Re: AMBER: Steered Molecular Dynamics with AMBER? (Wed Jan 05 2005 - 06:13:10 PST)
aldo jongejan
- Re: AMBER: Steered Molecular Dynamics with AMBER? (Tue Jan 04 2005 - 23:46:44 PST)
Andrew Box
- AMBER: Converting prmtop and inpcrd files (Tue Jan 18 2005 - 15:02:02 PST)
anshul.imtech.res.in
- AMBER: Problem in ptraj (Mon Jan 31 2005 - 14:23:30 PST)
- Re: AMBER: Floating Exception and installation on Digital Unix. (Tue Jan 11 2005 - 07:17:32 PST)
- AMBER: Floating Exception and installation on Digital Unix. (Sun Jan 09 2005 - 19:32:11 PST)
- Re: AMBER: Floating Exception in sander (Fri Jan 07 2005 - 06:14:12 PST)
- AMBER: Floating Exception in sander (Wed Jan 05 2005 - 15:26:20 PST)
Anthony Fejes
- Re: AMBER: .dat and frcmod files (Mon Jan 10 2005 - 14:47:12 PST)
- Re: AMBER: Steered Molecular Dynamics with AMBER? (Wed Jan 05 2005 - 08:26:05 PST)
- AMBER: AMBER related employment (Mon Jan 03 2005 - 17:43:24 PST)
Arantxa Sanz
- RE: AMBER: Andersen thermostat: target T? (Mon Jan 24 2005 - 02:18:05 PST)
- AMBER: Andersen thermostat: target T? (Fri Jan 21 2005 - 11:06:01 PST)
Asim Okur
- Re: AMBER: sander failure (Thu Jan 20 2005 - 14:50:25 PST)
Azira Muhamad
- AMBER: Problem with restart file (Wed Jan 12 2005 - 23:45:30 PST)
Bill Ross
- Re: AMBER: Problems with xLEaP (Fri Jan 28 2005 - 14:26:12 PST)
- Re: AMBER: carnal - water-mediated HBond (Sat Jan 22 2005 - 20:49:09 PST)
- Re: AMBER: Converting prmtop and inpcrd files (Tue Jan 18 2005 - 15:43:04 PST)
- Re: AMBER: amber8 parallel sander (Wed Jan 12 2005 - 12:12:18 PST)
- Re: AMBER: the DNA conformation after engery minimization using NMODE (Mon Jan 10 2005 - 19:56:25 PST)
- Re: AMBER: Hbonds restraints OK but Dihedral restraints not applied (Tue Jan 04 2005 - 10:07:49 PST)
Cai, Yufeng
- AMBER: sander free energy calculation (Tue Jan 11 2005 - 11:47:03 PST)
cailliez
- AMBER: distance between images (Wed Jan 05 2005 - 02:34:46 PST)
Carlos Simmerling
- Re: AMBER: replica exchange trouble with unit 6 (Thu Jan 27 2005 - 07:10:20 PST)
- Re: AMBER: sander failure (Thu Jan 20 2005 - 14:20:00 PST)
- Re: AMBER: problem with position restraints (refc file) (Tue Jan 18 2005 - 09:36:55 PST)
- Re: AMBER: problem with position restraints (refc file) (Tue Jan 18 2005 - 08:03:03 PST)
- Re: AMBER: GB differences between AMBER7 and AMBER8 (Tue Jan 18 2005 - 06:08:20 PST)
- Re: AMBER: Sander Replica Exchange exits with unit 6 error (Mon Jan 17 2005 - 09:17:56 PST)
- Re: AMBER: Sander Replica Exchange exits with unit 6 error (Mon Jan 17 2005 - 06:45:56 PST)
- Re: AMBER: Sander Replica Exchange exits with unit 6 error] (Mon Jan 17 2005 - 05:58:20 PST)
- Re: AMBER: Coordinate Superimposition in PTRAJ (Sun Jan 16 2005 - 06:56:30 PST)
- Re: AMBER: amber8 parallel sander (Wed Jan 12 2005 - 07:30:22 PST)
- Re: AMBER: amber8 parallel sander (Wed Jan 12 2005 - 06:03:32 PST)
- Re: AMBER: van der waals parameters (Wed Jan 12 2005 - 04:41:31 PST)
- Re: AMBER: amber8 parallel sander (Wed Jan 12 2005 - 04:38:30 PST)
- Re: AMBER: Steered Molecular Dynamics with AMBER? (Tue Jan 04 2005 - 14:47:38 PST)
- Re: AMBER: Hbonds restraints OK but Dihedral restraints not applied (Tue Jan 04 2005 - 04:47:03 PST)
Cenk Andac
- Re: AMBER: &dipoles in sander (Fri Jan 28 2005 - 11:25:36 PST)
- RE: AMBER: problem with pressure equilibration (Fri Jan 28 2005 - 11:18:02 PST)
- RE: AMBER: &dipoles in sander (Fri Jan 28 2005 - 02:04:21 PST)
- AMBER: problem with pressure equilibration (Thu Jan 27 2005 - 14:23:59 PST)
- RE: AMBER: &dipoles in sander (Sat Jan 22 2005 - 01:47:50 PST)
- AMBER: &dipoles in sander (Fri Jan 21 2005 - 03:59:47 PST)
- AMBER: Copper library? (Mon Jan 10 2005 - 10:31:51 PST)
- RE: AMBER: Questions about sander.QMMM (Sat Jan 08 2005 - 01:57:22 PST)
- AMBER: Questions about sander.QMMM (Fri Jan 07 2005 - 07:51:56 PST)
- Re: AMBER: Problem with computing Resp charges using RED (Sat Jan 01 2005 - 06:08:24 PST)
Chris Moth
- AMBER: Manuals need update: protonate -b and -c options gone in Amber 7 and 8 (Mon Jan 31 2005 - 13:39:56 PST)
- AMBER: General Question about AMBER's Free Energy Perturbation Method (Wed Jan 05 2005 - 14:06:33 PST)
David A. Case
- Re: AMBER: Manuals need update: protonate -b and -c options gone in Amber 7 and 8 (Mon Jan 31 2005 - 14:56:21 PST)
- Re: AMBER: FW: amber 8 problem (Mon Jan 31 2005 - 10:37:08 PST)
- Re: AMBER: new tutorial available (Fri Jan 28 2005 - 16:57:28 PST)
- Re: AMBER: antechamber error message (Fri Jan 28 2005 - 14:00:22 PST)
- Re: AMBER: &dipoles in sander (Fri Jan 28 2005 - 10:21:59 PST)
- Re: AMBER: TI with electrostatic decoupling at sander (Thu Jan 27 2005 - 17:27:10 PST)
- Re: AMBER: ANTECHAMBER & DIVCON (Thu Jan 27 2005 - 17:12:23 PST)
- Re: AMBER: TI with electrostatic decoupling at sander (Wed Jan 26 2005 - 21:51:32 PST)
- Re: AMBER: new tutorial available (Wed Jan 26 2005 - 09:27:58 PST)
- Re: AMBER: collision frequency in GBSA dynamics (Tue Jan 25 2005 - 14:23:34 PST)
- Re: AMBER: NAN errors (Tue Jan 25 2005 - 14:09:11 PST)
- Re: AMBER: Error while running resp. (Tue Jan 25 2005 - 08:43:32 PST)
- Re: AMBER: TI with electrostatic decoupling at sander (Tue Jan 25 2005 - 08:41:36 PST)
- Re: AMBER: How to make PDB file by myself (Tue Jan 25 2005 - 08:40:21 PST)
- Re: AMBER: test suite possible failures (Mon Jan 24 2005 - 14:38:21 PST)
- Re: AMBER: system size limit (Sun Jan 23 2005 - 22:56:30 PST)
- Re: AMBER: Question about TI integral method (Sun Jan 23 2005 - 22:41:26 PST)
- Re: AMBER: problem runing parallel (REM) on tru64 (Sat Jan 22 2005 - 10:25:55 PST)
- Re: AMBER: eedmeth=5 (Sat Jan 22 2005 - 10:20:22 PST)
- Re: AMBER: Andersen thermostat: target T? (Fri Jan 21 2005 - 16:23:17 PST)
- Re: AMBER: amber 8 installation (Fri Jan 21 2005 - 09:55:50 PST)
- Re: AMBER: Cutoff for anal (Thu Jan 20 2005 - 11:17:31 PST)
- AMBER: new tutorial available (Thu Jan 20 2005 - 11:06:30 PST)
- Re: AMBER: enhanced sampling methods (Wed Jan 19 2005 - 12:34:24 PST)
- Re: AMBER: ptraj analysis (Wed Jan 19 2005 - 12:24:58 PST)
- Re: AMBER: Scaling of charges in a polarizable simulation ! (Wed Jan 19 2005 - 12:11:08 PST)
- Re: AMBER: Amber8 installation problems on Sparc/Solaris9 (Tue Jan 18 2005 - 08:48:33 PST)
- Re: AMBER: details of new aminoacid (Tue Jan 18 2005 - 08:01:20 PST)
- Re: AMBER: new aminoacid (Mon Jan 17 2005 - 09:56:34 PST)
- Re: AMBER: protonate (Fri Jan 14 2005 - 10:36:35 PST)
- Re: AMBER: PB dynamics (Wed Jan 12 2005 - 09:26:19 PST)
- Re: AMBER: units (Wed Jan 12 2005 - 09:22:03 PST)
- Re: AMBER: Dummy Atoms: How to create them? (Tue Jan 11 2005 - 21:54:02 PST)
- Re: AMBER: AMBER tutorial ambpdb question (Mon Jan 10 2005 - 19:16:10 PST)
- Re: AMBER: dynamics (Sat Jan 08 2005 - 13:05:53 PST)
- Re: AMBER: Weighting of different restraint types? (Fri Jan 07 2005 - 16:06:37 PST)
- Re: AMBER: recompiling problem on IBM aix (Fri Jan 07 2005 - 11:03:30 PST)
- Re: AMBER: about install amber8 on windows (Fri Jan 07 2005 - 10:59:27 PST)
- Re: AMBER: How can i use AMBER with CHARMM forcefield parameter? (Thu Jan 06 2005 - 06:23:44 PST)
- Re: AMBER: Dummy Atoms: How to create them? (Wed Jan 05 2005 - 09:40:11 PST)
- Re: AMBER: Hbonds restraints OK but Dihedral restraints not applied (Mon Jan 03 2005 - 08:34:09 PST)
- Re: AMBER: Sander and NMODE energy minimization (Sun Jan 02 2005 - 14:47:28 PST)
- Re: AMBER: NSCM (Sun Jan 02 2005 - 14:35:54 PST)
David E. Konerding
- Re: AMBER: Steered Molecular Dynamics with AMBER? (Tue Jan 04 2005 - 20:44:15 PST)
david.evans.ulsop.ac.uk
- Re: AMBER: calculating electrostatic potential (Tue Jan 25 2005 - 03:24:52 PST)
Difei Wang
- Re: AMBER: new tutorial available (Fri Jan 28 2005 - 16:08:59 PST)
Emmanuel Giudice
- Re: AMBER: Compiling AMBER 8 for Mac OSX (Parallel) (Mon Jan 17 2005 - 22:09:47 PST)
Eric Hu
- Re: AMBER: skip snapshots with ptraj in amber 8.0 (Mon Jan 31 2005 - 17:08:26 PST)
- AMBER: skip snapshots with ptraj in amber 8.0 (Mon Jan 31 2005 - 11:30:58 PST)
Fabien Cailliez
- Re: AMBER: pmemd and restraints (Thu Jan 27 2005 - 01:01:31 PST)
- AMBER: pmemd and distance restraint (Thu Jan 20 2005 - 02:39:20 PST)
- AMBER: GB differences between AMBER7 and AMBER8 (Tue Jan 18 2005 - 05:53:04 PST)
- Re: AMBER: distance restraint and file fort.35 (Mon Jan 17 2005 - 07:58:03 PST)
- AMBER: distance restraint and file fort.35 (Mon Jan 17 2005 - 03:34:00 PST)
fangyu liang
- AMBER: Sander and NMODE energy minimization (Sat Jan 01 2005 - 21:53:49 PST)
Filip Lankas
- AMBER: pmemd and restraints (Wed Jan 26 2005 - 09:01:50 PST)
Furse, Kristina Elisabet
- Re: AMBER: Problem in ptraj (Mon Jan 31 2005 - 09:22:21 PST)
- Re: AMBER: IGB parameter (Wed Jan 19 2005 - 11:33:13 PST)
FyD
- Re: AMBER: D-amino acid prep-files(simple method) (Sun Jan 23 2005 - 12:05:38 PST)
- Re: AMBER: Problem with computing Resp charges using RED (Sat Jan 01 2005 - 11:51:12 PST)
Germán Sciaini
- Re: AMBER: units (Thu Jan 13 2005 - 03:35:07 PST)
- Re: AMBER: units (Thu Jan 13 2005 - 03:33:16 PST)
- Re: AMBER: .dat and frcmod files (Tue Jan 11 2005 - 02:46:03 PST)
- Re: AMBER: Copper library? (Tue Jan 11 2005 - 02:40:55 PST)
- AMBER: dynamics (Sat Jan 08 2005 - 11:51:30 PST)
Giulio Rastelli
- AMBER: collision frequency in GBSA dynamics (Tue Jan 25 2005 - 10:33:33 PST)
gsmith.ibab.ac.in
- AMBER: parallel run (Tue Jan 11 2005 - 02:27:20 PST)
- AMBER: istart2 (Mon Jan 10 2005 - 05:14:15 PST)
- AMBER: error in parallel (Mon Jan 10 2005 - 00:18:51 PST)
Guanglei Cui
- Re: AMBER: skip snapshots with ptraj in amber 8.0 (Mon Jan 31 2005 - 14:19:27 PST)
- AMBER: system size limit (Sun Jan 23 2005 - 21:54:06 PST)
- Re: AMBER: Sander Replica Exchange exits with unit 6 error (Mon Jan 17 2005 - 11:31:07 PST)
- Re: AMBER: Sander Replica Exchange exits with unit 6 error (Mon Jan 17 2005 - 08:09:03 PST)
- Re: AMBER: Problem with restart file (Thu Jan 13 2005 - 07:40:14 PST)
Guillaume Bollot
- AMBER: AMBER 8: Freeze AND restrain questions (Mon Jan 24 2005 - 08:19:11 PST)
Gustavo Pierdominici Sottile
- AMBER: details of new aminoacid (Tue Jan 18 2005 - 05:01:15 PST)
- AMBER: new aminoacid (Mon Jan 17 2005 - 08:26:32 PST)
- AMBER: protonate (Fri Jan 14 2005 - 10:05:49 PST)
Harianto
- Re: AMBER: Increasing Volume with ntb=1 (Thu Jan 27 2005 - 09:49:52 PST)
- Re: AMBER: Increasing Volume with ntb=1 (Wed Jan 26 2005 - 15:19:59 PST)
- AMBER: Increasing Volume with ntb=1 (Wed Jan 26 2005 - 12:12:29 PST)
- AMBER: Cutoff for anal (Thu Jan 20 2005 - 09:50:14 PST)
heddi
- AMBER: LEAP (Tue Jan 25 2005 - 05:42:36 PST)
Holger Gohlke
- Re: AMBER: ptraj analysis (Wed Jan 19 2005 - 23:28:27 PST)
- Re: AMBER: RMS fluctuations along modes obtained from PCA (Wed Jan 19 2005 - 06:51:10 PST)
- Re: AMBER: PBCAL=0. Problems in MM/PBSA (Thu Jan 13 2005 - 23:31:45 PST)
Ilyas Yildirim
- Re: AMBER: new tutorial available (Wed Jan 26 2005 - 03:59:16 PST)
- Re: AMBER: calculating electrostatic potential (Tue Jan 25 2005 - 10:26:32 PST)
- AMBER: .dat and frcmod files (Mon Jan 10 2005 - 14:10:36 PST)
- Re: AMBER: Dummy Atoms: How to create them? (Wed Jan 05 2005 - 13:05:22 PST)
- Re: AMBER: Dummy Atoms: How to create them? (Tue Jan 04 2005 - 19:25:24 PST)
Jagdish Rai
- AMBER: D-amino acid prep-files(simple method) (Sun Jan 23 2005 - 06:18:45 PST)
- AMBER: SO4 prep file (Tue Jan 18 2005 - 04:36:42 PST)
Javier Perez Miron
- AMBER: IGB parameter (Wed Jan 19 2005 - 09:09:38 PST)
- AMBER: PBCAL=0. Problems in MM/PBSA (Thu Jan 13 2005 - 12:41:29 PST)
Jiri Sponer
- Re: AMBER: carnal - water-mediated HBond (Sun Jan 23 2005 - 06:52:55 PST)
Jiten
- AMBER: PBSA residual and pairwise decompostion (Tue Jan 25 2005 - 05:43:38 PST)
- Re: AMBER: MM_PBSA fillratio error (Tue Jan 04 2005 - 22:54:35 PST)
- AMBER: MM_PBSA fillratio error (Mon Jan 03 2005 - 01:36:30 PST)
Joe Nolan
- AMBER: Amber8 installation problems on Sparc/Solaris9 (Tue Jan 18 2005 - 08:17:35 PST)
Jordi Rodrigo
- AMBER: Sander Replica Exchange exits with unit 6 error (Tue Jan 25 2005 - 06:28:13 PST)
- AMBER: Sander Replica Exchange exits with unit 6 error (Tue Jan 18 2005 - 06:46:27 PST)
- AMBER: Sander Replica Exchange exits with unit 6 error (Mon Jan 17 2005 - 06:57:53 PST)
- AMBER: Sander Replica Exchange exits with unit 6 error (Mon Jan 17 2005 - 05:25:14 PST)
- AMBER: Sander Replica Exchange exits with unit 6 error (Mon Jan 17 2005 - 04:37:00 PST)
- AMBER: Sander Replica Exchange exits with unit 6 error] (Mon Jan 17 2005 - 00:02:51 PST)
Julien Michel
- Re: AMBER: new tutorial available (Wed Jan 26 2005 - 05:48:55 PST)
- Re: AMBER: ANTECHAMBER & DIVCON (Wed Jan 26 2005 - 03:09:05 PST)
Kara Di Giorgio
- Re: AMBER: Problems with xLEaP (Fri Jan 28 2005 - 16:48:52 PST)
- Re: AMBER: Problems with xLEaP (Fri Jan 28 2005 - 16:18:44 PST)
- Re: AMBER: Problems with xLEaP (Fri Jan 28 2005 - 16:14:02 PST)
- AMBER: Problems with xLEaP (Fri Jan 28 2005 - 14:04:14 PST)
Kara Wald
- AMBER: Can someone recommend a tutorial? (Thu Jan 20 2005 - 12:28:46 PST)
- AMBER: AMBER tutorial ambpdb question (Mon Jan 10 2005 - 17:33:44 PST)
Kenley Barrett
- AMBER: NCOPY definition (Fri Jan 28 2005 - 14:59:14 PST)
Lihua Wang
- AMBER: eedmeth=5 (Fri Jan 21 2005 - 16:20:59 PST)
M. L. Dodson
- Re: AMBER: Floating Exception and installation on Digital Unix. (Tue Jan 11 2005 - 07:46:45 PST)
- Re: AMBER: Questions about sander.QMMM (Fri Jan 07 2005 - 08:45:45 PST)
- Re: AMBER: Questions about sander.QMMM (Fri Jan 07 2005 - 08:26:25 PST)
Majid moghaddam
- AMBER: RMS fluctuations along modes obtained from PCA (Mon Jan 17 2005 - 05:47:56 PST)
Mayumi Haga
- AMBER: How to make PDB file by myself (Mon Jan 24 2005 - 20:23:32 PST)
Melinda Layten
- Re: AMBER: Problem with restart file (Thu Jan 13 2005 - 06:53:42 PST)
mingche Pan
- RE: AMBER: nmode calculation (Mon Jan 24 2005 - 14:12:13 PST)
- AMBER: nmode calculation (Mon Jan 24 2005 - 07:34:18 PST)
- AMBER: nmode calculation (Fri Jan 21 2005 - 17:43:32 PST)
Monica Civera
- AMBER: units (Wed Jan 12 2005 - 07:12:19 PST)
- AMBER: van der waals parameters (Wed Jan 12 2005 - 03:42:53 PST)
- AMBER: guanidinium chloride (Mon Jan 10 2005 - 07:27:38 PST)
myang
- Re: AMBER: protonate (Tue Jan 18 2005 - 08:07:12 PST)
Nagy, Peter I.
- RE: AMBER: guanidinium chloride (Mon Jan 10 2005 - 09:15:41 PST)
nallen.unca.edu
- AMBER: Compiling AMBER 8 for Mac OSX (Parallel) (Mon Jan 17 2005 - 09:41:06 PST)
Nelson Fonseca
- AMBER: PB dynamics (Wed Jan 12 2005 - 02:06:33 PST)
- AMBER: MM_PBSA arguments for MM calculations (Wed Jan 05 2005 - 03:54:30 PST)
Ping Lin
- AMBER: QM/MM with pmemd (Tue Jan 11 2005 - 11:08:45 PST)
Piotr Cieplak
- Re: AMBER: Scaling of charges in a polarizable simulation ! (Wed Jan 19 2005 - 22:56:04 PST)
- Re: AMBER: Scaling of charges in a polarizable simulation ! (Wed Jan 19 2005 - 10:14:05 PST)
- Re: AMBER: Steered Molecular Dynamics with AMBER? (Tue Jan 04 2005 - 23:29:41 PST)
pl
- Re: AMBER: problem with position restraints (refc file) (Wed Jan 19 2005 - 03:47:18 PST)
- Re: AMBER: problem with position restraints (refc file) (Tue Jan 18 2005 - 09:13:17 PST)
- AMBER: problem with position restraints (refc file) (Tue Jan 18 2005 - 07:25:27 PST)
- Re: AMBER: Weighting of different restraint types? (Mon Jan 10 2005 - 01:27:19 PST)
- AMBER: Weighting of different restraint types? (Fri Jan 07 2005 - 05:03:15 PST)
- Re: AMBER: Hbonds restraints OK but Dihedral restraints not applied (Tue Jan 04 2005 - 05:25:39 PST)
- Re: AMBER: Hbonds restraints OK but Dihedral restraints not applied (Tue Jan 04 2005 - 03:27:07 PST)
- AMBER: Hbonds restraints OK but Dihedral restraints not applied (Mon Jan 03 2005 - 06:06:48 PST)
Pradipta Bandyopadhyay
- Re: AMBER: Scaling of charges in a polarizable simulation ! (Wed Jan 19 2005 - 20:54:13 PST)
- AMBER: Scaling of charges in a polarizable simulation ! (Wed Jan 19 2005 - 08:02:37 PST)
praveena moldy
- AMBER: Error while running resp. (Tue Jan 25 2005 - 06:28:55 PST)
- AMBER: Error while running resp. (Tue Jan 25 2005 - 06:24:01 PST)
Ray Luo
- Re: AMBER: MM_PBSA fillratio error (Mon Jan 03 2005 - 14:28:46 PST)
Rino Ragno
- AMBER: AMBER8: compiling under cygwin using lahey fortran (Wed Jan 19 2005 - 14:13:07 PST)
- AMBER: Steered Molecular Dynamics with AMBER? (Tue Jan 04 2005 - 14:33:09 PST)
Robert Duke
- Re: AMBER: pmemd and restraints (Thu Jan 27 2005 - 05:15:00 PST)
- Re: AMBER: pmemd and restraints (Wed Jan 26 2005 - 09:45:01 PST)
- Re: AMBER: amber 8 benchmarks dec alpha (Mon Jan 24 2005 - 14:27:50 PST)
- Re: AMBER: amber 8 installation (Fri Jan 21 2005 - 10:03:42 PST)
- Re: AMBER: pmemd and distance restraint (Thu Jan 20 2005 - 19:12:17 PST)
- Re: AMBER: pmemd and distance restraint (Thu Jan 20 2005 - 04:41:30 PST)
- Re: AMBER: amber8 parallel sander (Mon Jan 17 2005 - 10:13:10 PST)
- Re: AMBER: distance restraint and file fort.35 (Mon Jan 17 2005 - 06:48:57 PST)
- Re: AMBER: amber8 parallel sander (Wed Jan 12 2005 - 07:20:40 PST)
- Re: AMBER: amber8 parallel sander (Wed Jan 12 2005 - 05:03:05 PST)
- Re: AMBER: Floating Exception and installation on Digital Unix. (Tue Jan 11 2005 - 05:18:20 PST)
- Re: AMBER: Floating Exception and installation on Digital Unix. (Sun Jan 09 2005 - 09:54:16 PST)
- Re: AMBER: Floating Exception in sander (Fri Jan 07 2005 - 05:15:44 PST)
- Re: AMBER: Floating Exception in sander (Wed Jan 05 2005 - 05:55:22 PST)
Ross Walker
- RE: AMBER: Problems with xLEaP (Fri Jan 28 2005 - 16:29:10 PST)
- RE: AMBER: NCOPY definition (Fri Jan 28 2005 - 15:18:05 PST)
- RE: AMBER: Problems with xLEaP (Fri Jan 28 2005 - 14:19:52 PST)
- RE: AMBER: question about xwin load pdb file (Fri Jan 28 2005 - 10:20:18 PST)
- RE: AMBER: &dipoles in sander (Fri Jan 28 2005 - 10:10:21 PST)
- RE: AMBER: question about xwin load pdb file (Thu Jan 27 2005 - 21:38:30 PST)
- RE: AMBER: problem with pressure equilibration (Thu Jan 27 2005 - 14:45:20 PST)
- RE: AMBER: Increasing Volume with ntb=1 (Thu Jan 27 2005 - 10:13:27 PST)
- RE: AMBER: Increasing Volume with ntb=1 (Wed Jan 26 2005 - 14:59:57 PST)
- RE: AMBER: Increasing Volume with ntb=1 (Wed Jan 26 2005 - 12:42:13 PST)
- RE: AMBER: how to solvate in TIP5P box (Wed Jan 26 2005 - 10:26:22 PST)
- RE: AMBER: NAN errors (Tue Jan 25 2005 - 13:56:33 PST)
- RE: AMBER: What does a crash mean while running a md simulation? (Mon Jan 24 2005 - 22:28:32 PST)
- RE: AMBER: What does a crash mean while running a md simulation? (Mon Jan 24 2005 - 11:19:48 PST)
- RE: AMBER: nmode calculation (Mon Jan 24 2005 - 11:13:59 PST)
- RE: AMBER: &dipoles in sander (Sat Jan 22 2005 - 11:11:54 PST)
- RE: AMBER: &dipoles in sander (Fri Jan 21 2005 - 10:26:24 PST)
- RE: AMBER: Suspended (tty input) (Thu Jan 20 2005 - 15:58:13 PST)
- RE: AMBER: sander failure (Thu Jan 20 2005 - 14:47:34 PST)
- RE: AMBER: sander failure (Thu Jan 20 2005 - 14:26:58 PST)
- RE: AMBER: sander failure (Thu Jan 20 2005 - 14:04:32 PST)
- RE: AMBER: Can someone recommend a tutorial? (Thu Jan 20 2005 - 12:37:22 PST)
- RE: AMBER: Compiling AMBER 8 for Mac OSX (Parallel) (Wed Jan 19 2005 - 10:23:40 PST)
- RE: AMBER: new aminoacid (Mon Jan 17 2005 - 10:34:05 PST)
- RE: AMBER: Coordinate Superimposition in PTRAJ (Sun Jan 16 2005 - 10:59:48 PST)
- FW: AMBER: parametrization problem (Fri Jan 14 2005 - 14:39:12 PST)
- RE: AMBER: AMBER tutorial ambpdb question (Mon Jan 10 2005 - 18:14:49 PST)
- RE: AMBER: istart2 (Mon Jan 10 2005 - 09:18:32 PST)
- RE: AMBER: Questions about sander.QMMM (Fri Jan 07 2005 - 11:38:29 PST)
S.Sundar Raman
- AMBER:Hydroxy Proline (Thu Jan 20 2005 - 01:19:42 PST)
scopio
- AMBER: some question about MM-PBSA (Thu Jan 20 2005 - 07:10:39 PST)
- Re: AMBER: SO4 prep file (Tue Jan 18 2005 - 04:57:29 PST)
Sergio E. Wong
- Re: AMBER: amber 8 benchmarks dec alpha (Mon Jan 24 2005 - 15:54:41 PST)
- AMBER: amber 8 benchmarks dec alpha (Mon Jan 24 2005 - 14:08:14 PST)
- Re: AMBER: problem runing parallel (REM) on tru64 (Sat Jan 22 2005 - 12:44:23 PST)
- AMBER: problem runing parallel (REM) on tru64 (Fri Jan 21 2005 - 16:22:26 PST)
shuli kang
- Re: AMBER: What does a crash mean while running a md simulation? (Mon Jan 24 2005 - 23:35:45 PST)
- Re: AMBER: What does a crash mean while running a md simulation? (Mon Jan 24 2005 - 21:58:54 PST)
- AMBER: What does a crash mean while running a md simulation? (Sun Jan 23 2005 - 21:56:00 PST)
Sichun Yang
- AMBER: carnal - water-mediated HBond (Fri Jan 21 2005 - 14:36:52 PST)
Stern, Julie
- AMBER: gold atoms (Tue Jan 25 2005 - 08:53:09 PST)
- AMBER: test suite possible failures (Mon Jan 24 2005 - 11:39:42 PST)
- AMBER: amber 8 installation (Fri Jan 21 2005 - 09:28:17 PST)
Takashi Nakamura
- AMBER: H-atom types attached to a carbon atom next to carbonyl group (Mon Jan 17 2005 - 09:52:56 PST)
tanc.uci.edu
- AMBER: Question about TI integral method (Sun Jan 23 2005 - 02:01:33 PST)
Thomas E. Cheatham, III
- Re: AMBER: Suspended (tty input) (Thu Jan 20 2005 - 16:09:16 PST)
- AMBER: ptraj analysis (Wed Jan 19 2005 - 10:16:17 PST)
- Re: AMBER: distance between images (Wed Jan 05 2005 - 09:29:19 PST)
Venkata S Koppuravuri
- AMBER: NAN errors (Tue Jan 25 2005 - 13:39:45 PST)
Viktor Hornak
- Re: AMBER: AMBER 8: Freeze AND restrain questions (Mon Jan 24 2005 - 10:02:53 PST)
Vineet Pande
- AMBER: ANTECHAMBER & DIVCON (Wed Jan 26 2005 - 02:18:17 PST)
- RE: AMBER: How to make PDB file by myself (Tue Jan 25 2005 - 03:06:42 PST)
- RE: AMBER: eedmeth=5 (Sun Jan 23 2005 - 03:46:23 PST)
- RE: AMBER: H-atom types attached to a carbon atom next to carbonyl group (Mon Jan 17 2005 - 12:32:37 PST)
- RE: AMBER: Coordinate Superimposition in PTRAJ (Mon Jan 17 2005 - 01:45:20 PST)
- AMBER: Coordinate Superimposition in PTRAJ (Sun Jan 16 2005 - 03:42:09 PST)
- RE: FW: AMBER: parametrization problem (Sat Jan 15 2005 - 03:15:39 PST)
Vlad Cojocaru
- AMBER: plane definition in ptraj (Fri Jan 28 2005 - 10:00:23 PST)
- AMBER: pucker: deatails about pucker calculation (Fri Jan 28 2005 - 07:13:13 PST)
- AMBER: sugar pucker with Carnal and ptraj (Fri Jan 28 2005 - 06:56:23 PST)
- AMBER: calculating electrostatic potential (Tue Jan 25 2005 - 02:59:48 PST)
- AMBER: enhanced sampling methods (Wed Jan 19 2005 - 10:13:58 PST)
- AMBER: last call for early registrations for "Horizons2005" (Fri Jan 14 2005 - 05:19:00 PST)
Vojtěch Klusák
- AMBER: amber 8 problem (Mon Jan 31 2005 - 05:01:35 PST)
- AMBER: FW: amber 8 problem (Mon Jan 24 2005 - 00:13:47 PST)
Xiaoqing Wang
- AMBER: How to set AMBER parameter files for lipid? (Sun Jan 16 2005 - 17:38:49 PST)
Xiaoqing,Wang
- AMBER: lipid parameter file (Wed Jan 05 2005 - 00:23:07 PST)
- AMBER: lipid bilayer membrane force field parameter (Tue Jan 04 2005 - 01:51:47 PST)
Xiaowei (David) Li
- AMBER: the DNA conformation after engery minimization using NMODE (Mon Jan 10 2005 - 11:32:26 PST)
xiaowen
- AMBER: question about xwin load pdb file (Fri Jan 28 2005 - 08:48:28 PST)
- AMBER: question about xwin load pdb file (Thu Jan 27 2005 - 21:04:57 PST)
- AMBER: about install amber8 on windows (Thu Jan 06 2005 - 14:56:53 PST)
Yanze Zhang
- AMBER: gaussian output file (Mon Jan 31 2005 - 09:09:40 PST)
- AMBER: antechamber error message (Thu Jan 27 2005 - 07:02:46 PST)
yen li
- Re: AMBER: amber8 parallel sander (Mon Jan 17 2005 - 09:55:26 PST)
- Re: AMBER: amber8 parallel sander (Wed Jan 12 2005 - 05:54:48 PST)
- AMBER: amber8 parallel sander (Wed Jan 12 2005 - 02:57:19 PST)
ygao.phase1.unl.edu
- AMBER: how to solvate in TIP5P box (Wed Jan 26 2005 - 07:59:43 PST)
- AMBER: Suspended (tty input) (Thu Jan 20 2005 - 15:39:48 PST)
- RE: AMBER: sander failure (Thu Jan 20 2005 - 14:31:37 PST)
- RE: AMBER: sander failure (Thu Jan 20 2005 - 14:09:56 PST)
- AMBER: sander failure (Thu Jan 20 2005 - 13:46:56 PST)
yipinl.umich.edu
- Re: AMBER: TI with electrostatic decoupling at sander (Thu Jan 27 2005 - 09:39:46 PST)
- Re: AMBER: TI with electrostatic decoupling at sander (Wed Jan 26 2005 - 09:19:43 PST)
- AMBER: TI with electrostatic decoupling at sander (Mon Jan 24 2005 - 21:15:43 PST)
Yuuki A. Komata
- AMBER: recompiling problem on IBM aix (Thu Jan 06 2005 - 18:35:46 PST)
Yuuki Komata
- Re: AMBER: replica exchange trouble with unit 6 (Thu Jan 27 2005 - 17:27:50 PST)
- AMBER: replica exchange trouble with unit 6 (Thu Jan 27 2005 - 06:39:03 PST)
- AMBER: mm_pbsa example doesn't run (Fri Jan 21 2005 - 04:10:48 PST)
小杉貴洋
- AMBER:idecomp (Thu Jan 27 2005 - 03:22:37 PST)
王小清
- AMBER: How can i use AMBER with CHARMM forcefield parameter? (Sun Jan 02 2005 - 19:54:25 PST)

Amber Archive Jan 2005 by author