AMBER: parallel run

From: <gsmith.ibab.ac.in>
Date: Tue, 11 Jan 2005 15:57:20 +0530 (IST)

dear amber users and ross walker,

I followed the steps u said ie.,

go to amber/src directory

make clean

make

I tried these steps still the program does not seem to run in parallel
version.I used sander to continue a production run from a different
cluster to another with 4 machines (1 master,3 slaves each with 4
processors).earlier i used a cluster with 4 nodes with a processor each.

It runs in one machine,but seems to be searching for a long time to locate
the machines in the new cluster.

p0_12704: p4_error: Could not gethostbyname for host ~; may be invalid
name: 1001

the amusing thing is the sander module runs well for a system with 15,000
atoms system in parallel version.

can anyone suggest where the problem lies.can anyone help me.


thanks
smith


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Received on Tue Jan 11 2005 - 11:53:00 PST
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