AMBER:Hydroxy Proline

From: S.Sundar Raman <>
Date: Thu, 20 Jan 2005 14:49:42 +0530

i tried to create a AmberpramPrep file for Non standered hydroxy
proline from Standered Hydroxy proline.In that i don't know the
parameter fields.
i copied from c treminal oxygen atem paramer and i pasted it.
when i loaded the pdb it accepts.but when i create the modfied
param94.dat file i don't know the values for torsion angle, in bond
parameter other than bond length,in bond angle parameter other than
bond can i assign to calculate or get these i included my modfied parm94.dat file and modifed
amberparamPrep file.
please help me in this regard.
used package amber 6.0 in SGI O2,IRIX
S.Sundar Raman
Chemical Lab,
ph: 044-24411830

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Received on Thu Jan 20 2005 - 09:53:00 PST
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