Hi Vineet,
> I want to superimpose a number of 'different' complexes of the 'same
> protein' with different ligands obtained after a PME/PBC MD
> protocol, and
The latest version of VMD (
http://www.ks.uiuc.edu/Research/vmd/) can do an
RMS fit of different structures. This can also read amber format files. You
can, for example, load several structures and superimpose them all by RMS
fitting specific atoms. E.g. Alpha-Carbons.
All the best
Ross
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|\oss Walker
| Department of Molecular Biology TPC15 |
| The Scripps Research Institute |
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| EMail:- ross.rosswalker.co.uk |
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Received on Sun Jan 16 2005 - 19:53:00 PST
