Amber Archive Jun 2003 by subject
- 1-4 vdw term in Glycam2000
- A question of time
- Amber Installation on Octane
- AMBER parameters
- AMBER question
- Amber6 on RH 9
- AMBER7 on linux cluster
- angle violation in SANDER simulation
- Another mm_pbsa problem
- Antechamber
- antechamber read gaussian file
- any tool to know what functions are being called while sander is being run??
- belly vs. position restraints
- bugfix ptraj-6.4 (need to confirm)
- calculated b-factor higher than x-ray
- can you give me more advice about: vlimit exceeded when sander calculate free energies using TI
- CCL: Amber free energy equation
- constant volume
- constraint + restraint
- debug sander
- delphi on linux
- EGB problem in MMPBSA
- electrostatic interaction energ. /delphi
- Error in minimization using sander_classic of AMBER6
- Flag for antechamber
- GAFF in GUI MD apps
- GB model
- glycam force field with amber
- helix axis for A-RNA
- helix movement
- help on solvatecap
- HGH, IGF-1 Supply
- how to restrain water
- how to use profec???
- information
- Install Amber7 in linux cluster
- install problem
- IR6 and makeDIST-RST
- jarrod
- keeping pdb residues numbers ?
- LEAP compiling problem
- May I get you help from new user of amber?
- May I get you help from new user of amber?(xmkmf)
- Medical Imaging Risk & Reward -- Medical Imaging Consultant
- Memory problem
- Mg++ polarizability
- MGB RADII PARAMETRIZATION
- Minimization does not converge.
- mm_pbsa error message
- mm_pbsa problem
- mpirun problem: no rsh
- Nancy's leaving
- Need help recompiling
- New location for the Amber web site
- new tutorial available: introduction to ptraj
- NOESY restraints
- parallel sander jobs die with error: "MPI_COMM_RANK : Null communicator"
- perl question
- PME
- pol_h
- Problem in separating LES copies into different trajectory
- Problem with a library
- Problem with LES topology file
- PROBLEM WITH LIBRARY
- Problem with Snader
- Problem with XLEaP in Mandrake 9.1
- protonate
- ptraj question
- pyroglutamic acid (PCA)
- Q) vdw radii & GBSA error
- quasih problem
- Question about defining force field
- Question about defining force field (followup)
- RDPARM problems (ptraj)
- restart MD
- run sander?
- Running MD
- Sander error
- Sander problem
- saving trajectory of solute only
- shake problem?
- Software Sales
- solventbox at constant pressure
- Superimposed trajectory
- T in MD vs. T in wet experiments
- unifying trajectory files
- unit of output velocity
- VdW in FEP
- viewing movie with VMD
- vlimit exceeded when sander calculate free energies using TI
- web link for PLEP is not available.
- which AMBER program to use to get the e-density output?
- Last message date: Sun Jun 29 2003 - 16:53:01 PDT
- Archived on: Wed Dec 11 2024 - 05:53:13 PST
