Dear Quch,
The nonperiodic modifications were not put into sander until
version 7. If you need a non-periodic/vacuum simulation in
amber6 you will need to run sander_classic.
Sincerely,
Mike
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Physical mail: Dr. Michael F. Crowley
Department of Molecular Biology, TPC6
The Scripps Research Institute
10550 North Torrey Pines Road
La Jolla, California 92037
Electronic mail: crowley.scripps.edu
Telephone: 858/784-9290
Fax: 858/784-8688
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Received on Tue Jun 03 2003 - 13:53:01 PDT
