Amber Archive Oct 2000: by subject

(no subject)
- Alessandra Ricca (Tue Oct 31 2000 - 13:41:44 PST)
- Alessandra Ricca (Mon Oct 30 2000 - 16:23:12 PST)
- Alessandra Ricca (Mon Oct 30 2000 - 16:19:55 PST)
- Alessandra Ricca (Mon Oct 30 2000 - 09:08:30 PST)
- gail louise dempsey (Tue Oct 24 2000 - 15:54:32 PDT)
- Christian Pilger (Mon Oct 16 2000 - 10:20:20 PDT)
- Christian Pilger (Mon Oct 16 2000 - 10:20:20 PDT)
- Christian Pilger (Tue Oct 10 2000 - 08:26:05 PDT)
:trouble shooting in amber
- amit kumar (Thu Oct 19 2000 - 14:39:41 PDT)
A problem with "inhomogeneous'
- Wen Li (Mon Oct 30 2000 - 11:11:22 PST)
Adding metal parameter
- Michael Cooney (Tue Oct 24 2000 - 11:37:55 PDT)
- kiyean.nam_at_pharma.Novartis.com (Mon Oct 23 2000 - 15:53:27 PDT)
addition to prev. mail
- Eoin Galligan (Tue Oct 24 2000 - 07:44:44 PDT)
AMBER forcefield and thioglycosides
- Neil Whittemore (Thu Oct 05 2000 - 20:41:55 PDT)
AMBER on Linux- prob' solved----- thanks
- Prem Raj Joseph (Sat Oct 07 2000 - 18:58:48 PDT)
amber6
- jim caldwell (Thu Oct 12 2000 - 13:46:24 PDT)
- Scott E. Boesch (Thu Oct 12 2000 - 12:28:15 PDT)
amber6 on HP N-4000 Complex
- Scott Boesch (Fri Oct 13 2000 - 10:07:43 PDT)
Amber6 on SGI with IRIX6.5
- Nelson Brito (Sat Oct 07 2000 - 04:38:58 PDT)
- Grzegorz Jezierski (Fri Oct 06 2000 - 07:56:51 PDT)
AmberFFC 1.0
- Fran�ois Yves Dupradeau (Fri Oct 06 2000 - 05:45:45 PDT)
calculation time
- Andrew Aird (Mon Oct 23 2000 - 03:49:27 PDT)
carnal
- Eoin Galligan (Tue Oct 24 2000 - 04:24:55 PDT)
CATFEE Announcement
- CATFEE (Wed Oct 04 2000 - 19:17:29 PDT)
Cl and NO2
- Oscar Rey (Tue Oct 24 2000 - 07:25:28 PDT)
compilation of Amber6 on IBM SP3
- Giulio Rastelli (Tue Oct 10 2000 - 07:57:21 PDT)
compile on linux RH 6.2
- Andreas Svrcek-Seiler (Wed Oct 11 2000 - 23:09:08 PDT)
- Pascal Bonnet (Mon Oct 09 2000 - 03:52:13 PDT)
Compiler Bug?
- Kouji Hayama (Fri Oct 06 2000 - 06:21:05 PDT)
compiling AMBER on IBM 44P
- David Konerding (Mon Oct 09 2000 - 07:34:06 PDT)
- Paolo Dapporto (Mon Oct 09 2000 - 02:34:24 PDT)
correlation matrix
- Michal Otyepka (Fri Oct 13 2000 - 02:01:30 PDT)
CYM residue
- Jennifer Ludington (Tue Oct 10 2000 - 12:54:11 PDT)
Cysteine with negative charge
- Jennifer Ludington (Thu Oct 12 2000 - 10:16:52 PDT)
docking
- Andreas Svrcek-Seiler (Thu Oct 05 2000 - 09:48:46 PDT)
- Michal Otyepka (Mon Oct 02 2000 - 10:15:21 PDT)
Element
- Bill Ross (Tue Oct 31 2000 - 11:26:30 PST)
ENTER to WIN a beautiful 1969 Z/28 Camaro for $1.00
- Shannon (Tue Oct 24 2000 - 21:40:21 PDT)
Error in minimization and MD...
- Mausumi Mazumdar (Sun Oct 08 2000 - 22:43:03 PDT)
Ewald Bomb
- Luis Gracia (Mon Oct 02 2000 - 09:30:10 PDT)
Field delegate for MidasPlus
- Craig Marhefka (Thu Oct 12 2000 - 08:44:55 PDT)
Forwarded mail....
- Christian Pilger (Tue Oct 17 2000 - 07:38:44 PDT)
frcmod polar
- Bill Ross (Tue Oct 31 2000 - 00:06:56 PST)
Free Energy Calculation with Potential of Mean Force
- Nori (Fri Oct 13 2000 - 07:49:55 PDT)
Fwd: question about sensitivity of DNA free energy simulations
- Marcela Madrid (Fri Oct 06 2000 - 07:25:46 PDT)
gibbs ile->val energies
- Steve Edmondson (Wed Oct 25 2000 - 07:26:45 PDT)
gibbs output
- jim caldwell (Tue Oct 10 2000 - 15:37:28 PDT)
- Marcela Madrid (Tue Oct 10 2000 - 14:35:22 PDT)
HBOND analysis after CARNAL
- samantha hughes (Thu Oct 12 2000 - 05:31:11 PDT)
How to
- Bill Ross (Tue Oct 24 2000 - 12:47:44 PDT)
- M'Halla Jalel (Tue Oct 24 2000 - 11:57:03 PDT)
improper density in constant pressure md
- Scott A. Showalter (Thu Oct 12 2000 - 11:18:51 PDT)
information
- d'Alessio, Paola (Fri Oct 27 2000 - 08:42:36 PDT)
information on troubleshooting in Amber
- amit kumar (Mon Oct 09 2000 - 23:11:39 PDT)
input error?
- Troy Bothwell (Fri Oct 06 2000 - 11:24:02 PDT)
- jim caldwell (Fri Oct 06 2000 - 10:33:44 PDT)
installing AMBER on Linux
- schayg_at_puskin-a206.sote.hu (Thu Oct 12 2000 - 02:24:10 PDT)
- Prem Raj Joseph (Fri Oct 06 2000 - 12:47:53 PDT)
INTPRT
- David Pearlman (Sun Oct 08 2000 - 22:30:31 PDT)
- Craig A Marhefka (Sun Oct 08 2000 - 15:31:54 PDT)
LGFIL and other outputs for OWFEG calcs
- Craig Marhefka (Thu Oct 26 2000 - 11:40:31 PDT)
- Craig Marhefka (Thu Oct 12 2000 - 08:43:01 PDT)
- Craig A Marhefka (Mon Oct 09 2000 - 12:06:32 PDT)
- Craig A Marhefka (Mon Oct 09 2000 - 07:59:13 PDT)
Linux
- Giulio Rastelli (Tue Oct 17 2000 - 07:59:45 PDT)
MD namelist error with new Sander
- Michael Cooney (Wed Oct 11 2000 - 09:39:22 PDT)
min error
- jim caldwell (Wed Oct 25 2000 - 12:40:02 PDT)
- Eoin Galligan (Wed Oct 25 2000 - 11:22:00 PDT)
missing parameters
- Jie Lu (Wed Oct 25 2000 - 16:38:31 PDT)
- Jie Lu (Fri Oct 20 2000 - 15:22:24 PDT)
- Jie Lu (Fri Oct 20 2000 - 11:25:28 PDT)
MM_GBSA and DNA methylation
- Sylvie Derreumaux (Wed Oct 25 2000 - 07:06:17 PDT)
namelist
- Eoin Galligan (Wed Oct 11 2000 - 07:11:07 PDT)
nonbonded pairlist update
- Andrew Aird (Thu Oct 26 2000 - 14:38:28 PDT)
- Andrew Aird (Thu Oct 26 2000 - 05:55:48 PDT)
NSER
- Mao Xiang (Sun Oct 08 2000 - 04:11:48 PDT)
ntwxm,ntwvm,ntwem
- gail louise dempsey (Tue Oct 24 2000 - 15:47:45 PDT)
Organic solvents with Leap
- Jose Ramon Blas (Tue Oct 03 2000 - 17:20:58 PDT)
OWFEG documentation
- Craig A Marhefka (Thu Oct 05 2000 - 14:07:33 PDT)
Parm98 parameters
- Simon Cross (Fri Oct 20 2000 - 01:57:10 PDT)
periodic boundary conditions
- Pascal Bonnet (Mon Oct 09 2000 - 11:58:11 PDT)
Plotting Hbond info from Carnal
- samantha hughes (Mon Oct 23 2000 - 11:41:10 PDT)
PME
- David Case (Tue Oct 31 2000 - 10:55:15 PST)
- crowley (Tue Oct 31 2000 - 10:03:42 PST)
- Andrew Aird (Tue Oct 31 2000 - 04:34:16 PST)
POL3
- Bill Ross (Mon Oct 30 2000 - 14:25:06 PST)
- Bill Ross (Mon Oct 30 2000 - 13:09:40 PST)
Protein-Protein docking
- Simon Cross (Tue Oct 31 2000 - 02:02:19 PST)
- Sam Andersen (Mon Oct 30 2000 - 11:51:40 PST)
Running tests on SP2 machine
- ramon kleber da rocha (Tue Oct 31 2000 - 10:01:16 PST)
Sander compilation problem on HP
- jim caldwell (Tue Oct 31 2000 - 11:04:56 PST)
- Scott Boesch (Tue Oct 31 2000 - 07:57:48 PST)
Sander error in AMBER5
- Bhupesh Taneja (Fri Oct 06 2000 - 00:02:24 PDT)
- jim caldwell (Thu Oct 05 2000 - 13:22:55 PDT)
Sander error solved
- Bhupesh Taneja (Fri Oct 06 2000 - 15:52:03 PDT)
sander on sgi O2/R5k--workaround
- Nathalie Godbout (Tue Oct 24 2000 - 14:46:58 PDT)
sander test /Amber6
- Nathalie Godbout (Fri Oct 20 2000 - 06:14:50 PDT)
- Giulio Rastelli (Fri Oct 20 2000 - 01:29:03 PDT)
Sander_classic to Sander switch
- Michael Cooney (Thu Oct 26 2000 - 13:10:59 PDT)
saveamberparm problem of new molecule
- Mao Xiang (Sun Oct 08 2000 - 01:52:46 PDT)
self diffusion of water at equilibrium T=300K P=1atm
- gail louise dempsey (Fri Oct 20 2000 - 18:55:38 PDT)
SGI_MP and sander 6
- Nathalie Godbout (Tue Oct 03 2000 - 11:24:52 PDT)
- Jarrod Smith (Mon Oct 02 2000 - 14:37:45 PDT)
SGI_MP and sander 6] input files
- Nathalie Godbout (Wed Oct 04 2000 - 08:09:53 PDT)
shared memory sander
- Shixiang Yan (Fri Oct 20 2000 - 16:00:14 PDT)
showing density map?
- Bill Ross (Sun Oct 15 2000 - 19:43:07 PDT)
- Bill Ross (Sun Oct 15 2000 - 19:43:07 PDT)
- Jianxin Guo (Sun Oct 15 2000 - 13:48:48 PDT)
- Jianxin Guo (Sun Oct 15 2000 - 13:48:48 PDT)
sodium_gibbs_pme test
- Marcela Madrid (Mon Oct 30 2000 - 11:19:19 PST)
water density around the molecule
- Shixiang Yan (Fri Oct 13 2000 - 21:01:26 PDT)
- Shixiang Yan (Fri Oct 13 2000 - 21:01:26 PDT)
xleap
- schayg_at_puskin-a206.sote.hu (Wed Oct 04 2000 - 11:12:33 PDT)
- Marcela Madrid (Mon Oct 02 2000 - 09:10:45 PDT)
Xtal Waters and SolvateBox
- Michael Cooney (Mon Oct 30 2000 - 11:52:32 PST)
- Bill Ross (Tue Oct 24 2000 - 13:58:17 PDT)
- Javier De Las Rivas (Tue Oct 24 2000 - 08:04:46 PDT)
your mail
- schayg_at_puskin-a206.sote.hu (Thu Oct 12 2000 - 02:41:46 PDT)
Z-dna
- J. Bryan Buckalew (Mon Oct 23 2000 - 10:55:48 PDT)

Amber Archive Oct 2000 by subject